View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19903_low_11 (Length: 334)

Name: NF19903_low_11
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19903_low_11
NF19903_low_11
[»] chr7 (3 HSPs)
chr7 (36-316)||(3799115-3799400)
chr7 (1-48)||(3799401-3799448)
chr7 (10-62)||(44002529-44002581)
[»] chr1 (2 HSPs)
chr1 (4-120)||(8115626-8115745)
chr1 (4-124)||(50371532-50371654)
[»] chr5 (2 HSPs)
chr5 (23-123)||(4177569-4177673)
chr5 (4-87)||(17463241-17463324)
[»] chr2 (2 HSPs)
chr2 (24-118)||(24233366-24233459)
chr2 (4-88)||(26261678-26261762)
[»] chr8 (2 HSPs)
chr8 (4-132)||(12268460-12268589)
chr8 (23-76)||(7754842-7754895)
[»] chr4 (1 HSPs)
chr4 (4-120)||(9925501-9925618)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 36 - 316
Target Start/End: Complemental strand, 3799400 - 3799115
Alignment:
Q  36 aattttggtatatgatgctaatatatgactctaaaatttcaagttttacatttatttcagtcttcctctgtgccttctaaattgcctccaaggattataa 135  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| |||||| |||||||||||||||||||||||    
T  3799400 aattttggcatatgatgctaatatatgactcttaaatttcaagttttacatttatttcagtc---ctctatgccttataaattgcctccaaggattataa 3799304  T
Q  136 tgttatnnnnnnnctgtgttttattttactgaaaatgttagtttactatgagagtcgaatcccataagaatgaccctggttataggtcctatatatagta 235  Q
     ||| |        | | ||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  3799303 agttttaaaaaaattatattttattgtactgaaaatgctaatttactatgagagtcgaa-cccataagaatgaccctgattatagatcctatatatagta 3799205  T
Q  236 ctat---------tagggagtttacaaagatatcattgaacacactatcctagcttaactcacttacccctacccatcttatgtgtctat 316  Q
    ||||         ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3799204 ctataatccagattagggagtttacaaagatatcattgaacagactatcctagcttaactcacttacccctacccatcttatgtgtctat 3799115  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3799448 - 3799401
Alignment:
Q  1 tatttttattatatgttggatattgaatgttaacaaattttggtatat 48  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  3799448 tatttttgttatatgttggacattgaatgttgacaaattttggtatat 3799401  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 44002581 - 44002529
Alignment:
Q  10 tatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatg 62  Q
    |||||||||||  ||||||||| |||| |||||||||||| ||||||||||||    
T  44002581 tatatgttggacgttgaatgttgacaagttttggtatatgttgctaatatatg 44002529  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 8115626 - 8115745
Alignment:
Q  4 ttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttacatttat---ttcagtcttc 100  Q
    |||| ||||||||||||  ||||||||| ||||||||||||||||| |||||||||||| ||  ||||||||| ||| ||||||| |   ||||||||||    
T  8115626 ttttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctacattttttccttcagtcttc 8115725  T
Q  101 ctctgtgccttctaaattgc 120  Q
    |||| |||||||||||||||    
T  8115726 ctctatgccttctaaattgc 8115745  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 50371532 - 50371654
Alignment:
Q  4 ttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttaca--tttatttcagtcttcc 101  Q
    |||| |||||||||||||  |||||||| | |||||||||||| || | |||||||||  |||  |||||||| ||| ||||  ||| ||||| ||||||    
T  50371532 ttttgttatatgttggatgctgaatgttgataaattttggtatttgttactaatatatatctcctaaatttcaggttctacatttttttttcattcttcc 50371631  T
Q  102 tctgtgccttctaaattgcctcc 124  Q
    ||| ||||| |||||||||||||    
T  50371632 tctatgcctcctaaattgcctcc 50371654  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 4177569 - 4177673
Alignment:
Q  23 ttgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttacatttattt----cagtcttcctctgtgccttctaaatt 118  Q
    ||||||||| ||||||||||||||||| | |||||||||| |||  |||||||||||||||||||| |||    |||||||||| | ||||| |||||||    
T  4177569 ttgaatgttgacaaattttggtatatgttactaatatatgcctcctaaatttcaagttttacattttttttttccagtcttcctttatgcctcctaaatt 4177668  T
Q  119 gcctc 123  Q
    |||||    
T  4177669 gcctc 4177673  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 17463241 - 17463324
Alignment:
Q  4 ttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttacatt 87  Q
    |||| ||||||||||| | ||||||||| ||||||||||||||||  |||||||||||| |||  |||||| | ||||||||||    
T  17463241 ttttgttatatgttgggtgttgaatgttgacaaattttggtatatattgctaatatatgcctcctaaattttaggttttacatt 17463324  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 24233459 - 24233366
Alignment:
Q  24 tgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttacatttatttcagtcttcctctgtgccttctaaatt 118  Q
    |||||||| ||||||||||||||||| |||||||||||| |||  |||||||  |||  |||||| ||||||||||||||| ||||| |||||||    
T  24233459 tgaatgtttacaaattttggtatatgttgctaatatatgtctcctaaatttcgggttccacattt-tttcagtcttcctctatgcctcctaaatt 24233366  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 26261678 - 26261762
Alignment:
Q  4 ttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttacattt 88  Q
    |||| ||||||| ||||  ||||||||| ||||||||||||||||| ||| |||||||| |||  |||||||||||| |||||||    
T  26261678 ttttcttatatggtggacgttgaatgttgacaaattttggtatatgttgccaatatatgcctcctaaatttcaagttctacattt 26261762  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 12268589 - 12268460
Alignment:
Q  4 ttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttaca-tttatttcagtcttcct 102  Q
    |||| ||||||| ||||  ||||||||| ||||||||||||||||| |||||||||||| |||  |||||| | ||| || | ||| ||| |||||||||    
T  12268589 ttttgttatatgatggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaattttatgttctaaatttttttttagtcttcct 12268490  T
Q  103 ctgtgccttctaaattgcctccaaggatta 132  Q
     | |||||  |||||||||||  |||||||    
T  12268489 ttatgcctcttaaattgcctcttaggatta 12268460  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 7754895 - 7754842
Alignment:
Q  23 ttgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttca 76  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||  ||||||||    
T  7754895 ttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaatttca 7754842  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 9925501 - 9925618
Alignment:
Q  4 ttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactc-taaaatttcaagttttacatttatttcagtcttcct 102  Q
    |||| |||||||||| |  ||||||||| |||||||| ||||||||  | ||||||||| ||| |||| ||| | ||| || |||| |||||||||||||    
T  9925501 ttttgttatatgttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttaggttctaaatttttttcagtcttcct 9925600  T
Q  103 ctgtgccttctaaattgc 120  Q
    || | ||| |||||||||    
T  9925601 ctatacctcctaaattgc 9925618  T

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