View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_low_12 (Length: 331)
Name: NF19903_low_12
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 17594622 - 17594316
Alignment:
| Q |
18 |
tttatccgtctgcataaacaatcgattaaactgttcgagaaaatctaaaatcgttccactcccatatgcaaccactcccatatatgcaaatagacacata |
117 |
Q |
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| T |
17594622 |
tttatccgtctgcataaacaatcgattaaactgttcgagaaaatctaaaatcgttccactcccatatgcaaccactcccatatatgcaaatagacacata |
17594523 |
T |
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| Q |
118 |
aaaacaaggttcactcgtatatagtcacgtaatagagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594522 |
aaaacaaggttcactcgtatatagtcacgtaatagagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacaca |
17594423 |
T |
|
| Q |
218 |
aattgaaatttcatattggcagcaaaattgatattacgtactctatttacaatttaaactatgaaaatataaatcacattcataaccttccacaacttga |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17594422 |
aattgaaatttcatattggcagcaaaattgatattgcgtactctatttacaatttaaactatgaaaatataaatcacattcatagccttccacaacttga |
17594323 |
T |
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| Q |
318 |
tgatgtc |
324 |
Q |
| |
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|| |||| |
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| T |
17594322 |
tggtgtc |
17594316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 26906217 - 26906453
Alignment:
| Q |
19 |
ttatccgtctgcataaacaatcgattaaactgttcgagaaaatctaaaatcgttccactcccatatgcaaccactcccatatatgcaaatagacacataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
26906217 |
ttatccgtctgcataaacaatcgattaaactgttcgagaaaatctaaaatcgctccactcccatat------------------gcaaatagacacataa |
26906298 |
T |
|
| Q |
119 |
aaacaaggttcactcgtatatagtcacgtaatagagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaa |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26906299 |
aaacaaggttcactcgtatatagtaacgtaatagagacacaaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaa |
26906398 |
T |
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| Q |
219 |
attgaaatttcatattggcagcaaaattgatattacgtactctatttacaattta |
273 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
26906399 |
attgaaatttcatattggcagcaaaactgatattacgtactctatttataattta |
26906453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 26906629 - 26906676
Alignment:
| Q |
268 |
aatttaaactatgaaaatataaatcacattcataaccttccacaactt |
315 |
Q |
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| T |
26906629 |
aatttaaactatgaaaatataaatcacattcatagccttccacaactt |
26906676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 158 - 315
Target Start/End: Complemental strand, 20195665 - 20195508
Alignment:
| Q |
158 |
caaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcagcaaaattgatattacgta |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20195665 |
caaataaagggataatgtgaagcaattttctagattctggttaggtgagtacactacacaaattgaaatttcatattggcataaaaattgatattacgta |
20195566 |
T |
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| Q |
258 |
ctctatttacaatttaaactatgaaaatataaatcacattcataaccttccacaactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20195565 |
ctctatttacaatttaaactatgaaaatataaatcacattcatagccttccacaactt |
20195508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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