View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_low_13 (Length: 295)
Name: NF19903_low_13
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 44141937 - 44141685
Alignment:
| Q |
26 |
cattaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattctt |
125 |
Q |
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| T |
44141937 |
cattaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattctt |
44141838 |
T |
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| Q |
126 |
gctatgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttactccatacaagtccatacatccaagaacttacagg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141837 |
gctatgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttactccatacaagtccatacatccaagaacttacagg |
44141738 |
T |
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| Q |
226 |
acactgagacatgattcaagagcgccccctgcatgttctccatcagcgcttgt |
278 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141737 |
acacagagacatgattcaagagcgccccctgcatgttctccatcagcgcttgt |
44141685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 50062512 - 50062262
Alignment:
| Q |
28 |
ttaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcgcaatgcagatatagtttattcttgc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
50062512 |
ttaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatattctcacaatgcagatatagtttattctggc |
50062413 |
T |
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| Q |
128 |
tatgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcttctcgatcttttactccatacaagtccatacatccaagaacttacaggac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50062412 |
tatgcttagttgaagatgttccgaccgttgcatcatcccccagcatagcatctcgatcttttactcaatacaagtccatacatccaagaacttacaggac |
50062313 |
T |
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| Q |
228 |
actgagacatgattcaagagcgccccctgcatgttctccatcagcgcttgt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062312 |
actgagacatgattcaagagcgccccctgcatgttctccatcagcgcttgt |
50062262 |
T |
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