View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_low_4 (Length: 617)
Name: NF19903_low_4
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 54 - 374
Target Start/End: Original strand, 46576882 - 46577202
Alignment:
| Q |
54 |
gttacaataaatggatcatgtttatataaaacgattccaaattatgagcataatattgagagcattaaaacatataaattcaaaatcacacacatcttac |
153 |
Q |
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| T |
46576882 |
gttacaataaatggatcatgtccatataaaacgattccaaattatgagcataatattgagagcatgaaaacatataaattcaaaatcacacacatcttac |
46576981 |
T |
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| Q |
154 |
aacacatgacaagtaaaatccaagtgcatggttggattcaattttaagagagcaaaaagtgattattaagacttgatactggttttagtgtttgatggct |
253 |
Q |
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| T |
46576982 |
aacacatgacaagtaaaatccaagtgcatggttggattcaattttaagagaccaaaaagtgattattaagacttgatactggttttagtgttagatggct |
46577081 |
T |
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| Q |
254 |
ccctaatagaatcgtcttttactccataattgattttaggattaaggtaggatatgtagcttttgccttgaaaattttacattaaattcacttttaccta |
353 |
Q |
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| T |
46577082 |
ccgtaatagaatcgtcttttactccataattgattttaggattaaggtaggatatgtagcttttgccttgaaaattttacattaaattcacttttaccta |
46577181 |
T |
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| Q |
354 |
aaatcaattttactaaaccac |
374 |
Q |
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| T |
46577182 |
aaatcaattttactaaaccac |
46577202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 400 - 604
Target Start/End: Original strand, 46577201 - 46577405
Alignment:
| Q |
400 |
acatccaaacacacaataagaaatatacctttgcgtgtgcgcttcagaagctcacaacctcttgcaagtaattctctactatagatagtacccgagaaaa |
499 |
Q |
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| T |
46577201 |
acatccaaacacacaataagaaatatacctttgcgtgtgcgcttcagaagctcacaacctcttgcaagtaattctctactatagatagtacccgagaaaa |
46577300 |
T |
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| Q |
500 |
tatcttccggtacaagctcaccgctgaagctactatgggaacttccattaccattaccaccagaagcccccaaatttctctccacaggaatcactgctgc |
599 |
Q |
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| T |
46577301 |
tatcttcaggtacaagctcaccgctgaagctactatgggaacttccattaccattaccaccagaagcccccaaatttctctccacaggaatcactgctgc |
46577400 |
T |
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| Q |
600 |
aatat |
604 |
Q |
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| T |
46577401 |
aatat |
46577405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 32160096 - 32160044
Alignment:
| Q |
334 |
attaaattcacttttacctaaaatcaattttactaaaccacctaaatcaaaat |
386 |
Q |
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| T |
32160096 |
attaaactcacttttaattaaaatcaattttacaaaactaactaaatcaaaat |
32160044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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