View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19903_low_6 (Length: 468)
Name: NF19903_low_6
Description: NF19903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19903_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 32735521 - 32735091
Alignment:
| Q |
1 |
gtagaagacataacttgagtcgaggaatacaagacggtatgaagtgacttctgagacatggcggcatgctgctagaatagacaagttaagggactcaaga |
100 |
Q |
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| T |
32735521 |
gtagaagacagaacttgagtcgaggaatacaagacggtatgaagtgacttctgagacatggcggcatgctgctagaatagacaagttaagggattcaaaa |
32735422 |
T |
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| Q |
101 |
tatgaattaatgttgttttgtgccctgcggttgtttgtgaaccgaaggtggttagaaggtacaacactagggttcactgctagagctttttcaagggagt |
200 |
Q |
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| T |
32735421 |
tatgaattgttgttgttttgtgccctgcggttgtttgtgaaccgaagacggttagaaggtacaacaccagggttcattgctagagctttttcaagggagt |
32735322 |
T |
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| Q |
201 |
ggatgttagtcatgagatagtgcaaggtgttgatacgaatgtagaggcgttgtgttcctcggctagttgaaggacgaggattgtgactttcgtgcgttcc |
300 |
Q |
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| T |
32735321 |
ggatgttagtcatgagatagtgcaaggtgttgatacgaatgtagaggcgttgtgttcctcggctagttgaaggacgaggattgtgactttcgtgtgttcc |
32735222 |
T |
|
| Q |
301 |
gttaatttgatacgtgccttcattattagaaccgcatggagcagctttcttccatagcttgaggaatattgagtcccggttgcatcttgtcaatggagga |
400 |
Q |
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| T |
32735221 |
attaatttgatacgtgccttcattattagaaccgcatggagcagctttcttccatagcttgaggaatcttgagtcccggttgcatcttgtcaatggagga |
32735122 |
T |
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| Q |
401 |
agtaaaggaatgtaactttgttttgaacctg |
431 |
Q |
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| T |
32735121 |
agtaaaggaatgtaactttgttttgaacctg |
32735091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 16792793 - 16792839
Alignment:
| Q |
224 |
aaggtgttgatacgaatgtagaggcgttgtgttcctcggctagttga |
270 |
Q |
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| T |
16792793 |
aaggtgttgagacgaatgtagagtcgttgtgttcctcggctagttga |
16792839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 16792946 - 16793000
Alignment:
| Q |
377 |
cggttgcatcttgtcaatggaggaagtaaaggaatgtaactttgttttgaacctg |
431 |
Q |
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| T |
16792946 |
cggttgcatcttgttaatgcaggaagtggaggaatatagctttgttttgaacctg |
16793000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 14876331 - 14876384
Alignment:
| Q |
214 |
gagatagtgcaaggtgttgatacgaatgtagaggcgttgtgttcctcggctagt |
267 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14876331 |
gagataatgtaaggtgttgagacgaatgtagaggcgttgtgttcctcggctagt |
14876384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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