View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_high_1 (Length: 501)
Name: NF19904_high_1
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 483
Target Start/End: Original strand, 51740358 - 51740828
Alignment:
| Q |
13 |
agcaaaggtaggtaattcatgcagtttcatttgtattattaaatgataactcttaatttggttattattgtatatacaggatttaaatgcagaagattgc |
112 |
Q |
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| T |
51740358 |
agcaaaggtaggtaattcatgcagtttcatttgtattattaaatgattactcttaatttggttattattgtatatacaggatttaaatgcagaagattgc |
51740457 |
T |
|
| Q |
113 |
aacattgtgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccata |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740458 |
aacgttgtgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccata |
51740557 |
T |
|
| Q |
213 |
cagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740558 |
cagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaat |
51740657 |
T |
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| Q |
313 |
gcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaatccaatttattgtttcatgaaaaggaaaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740658 |
gcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaatccaatttattgtttcatgaaaaggaaaat |
51740757 |
T |
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| Q |
413 |
gctgaccttagtgacgatgatgattatggtggcaatgacgtcgttgaaattaataattcattagatgcatt |
483 |
Q |
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| T |
51740758 |
gctgaccttagtgacgatgatgattatggtggcaatgacgtcgttgaaattaataattcattagatgcatt |
51740828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 120 - 381
Target Start/End: Original strand, 10201260 - 10201521
Alignment:
| Q |
120 |
tgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccatacagctat |
219 |
Q |
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|||||||| | |||||| | |||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||| ||||| ||||||||| | || |
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| T |
10201260 |
tgctagtatcgatagtattaaacacaataatatcaggaataattgtgtcgtttatagcaaagggggaagagaaaatgttttcaaacaaccatacaacaat |
10201359 |
T |
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| Q |
220 |
tgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaatgcatgga |
319 |
Q |
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| T |
10201360 |
tgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcgatactagccacaatactagcaatacatggc |
10201459 |
T |
|
| Q |
320 |
tctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaa |
381 |
Q |
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||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||| |
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| T |
10201460 |
tctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaagaaaatcaa |
10201521 |
T |
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