View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_high_4 (Length: 314)
Name: NF19904_high_4
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 26165562 - 26165862
Alignment:
| Q |
1 |
agacaaattcgaaatgagtgtgacaattacgatgtacacgatccccttttttctc--cctgagaatagcttttatttatgtgaaattaataatttaagag |
98 |
Q |
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| T |
26165562 |
agacaaattcgaaatgagtgtgacaattacgatgtacacgatccccttttttctctccctgagaatagcttttatttatgtgaaattaataatttaagag |
26165661 |
T |
|
| Q |
99 |
tagtgctatgaattgaagatggatgacagtatggctaaatatggtaacttgacaaaatcatcagaactcaacaattcacatttttcataacatatagaag |
198 |
Q |
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| T |
26165662 |
tagtgctatgaattgaagatggatgacagtatggctaaatatggtaacttgacaaaatcat--gaactcaacaattcatatttttcataacatatagaag |
26165759 |
T |
|
| Q |
199 |
agtttattatcgtatagagtcatttgacatgataatacactctttttagtcatatagggcgactaaaagtatttacttaagataatacactctttttatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26165760 |
agtttattatcgtatagagtcatttgacatgataatacactctttttagtcatatagggcgactaaaagtatttacttaagataatacactctttttatc |
26165859 |
T |
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| Q |
299 |
ata |
301 |
Q |
| |
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||| |
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| T |
26165860 |
ata |
26165862 |
T |
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