View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_low_1 (Length: 633)
Name: NF19904_low_1
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 25 - 619
Target Start/End: Original strand, 833721 - 834308
Alignment:
| Q |
25 |
aatagacaaataatactattctccaaacatggaacttctgagttcattgacgaaagaagagattttagaagttctatctcatggtttatgtcatcagtgt |
124 |
Q |
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| T |
833721 |
aatagacaaataatactattctccaaacatggaacttctgagttcattgacgaaagaagagattttagaagttctatctcatggtttatgtcatcagtgt |
833820 |
T |
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| Q |
125 |
gaaacccttgtgcatgatcgtatcagaagaacccttcataaaagtaagtaacactcttttcattatgtattatttttagttacgtcgatttaagtttagg |
224 |
Q |
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| T |
833821 |
gaaaccctagggcatgatcgtatcagaagaacccttcataaaagtaagtaacactcttttcattatgtattatttttagttacgtcgatttaagtttagg |
833920 |
T |
|
| Q |
225 |
atttagggcttttgagtttttacattgccaatgaatcatgaccattaaaaaatttaaccctttatcataatccctctaaccttgacacgttgatacttga |
324 |
Q |
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| T |
833921 |
atttagggcttttgagtttttacattgccaatgaatcatgaccatt-aaaaatttaaccctttatcataatccctctaaccttgacacgttgatacttga |
834019 |
T |
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| Q |
325 |
tagtgttaagcttagtgaatcaagttcaaactttatatctctatgcttgtgttttttagtaatacgtagtgaattacatttaattttttaatcatctcaa |
424 |
Q |
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| T |
834020 |
tagtgttaagcttagtgaatcaagttcaaactttatatctctatgcttgtgttttttagtaataagtagtgaattacatgtaattttttaatcatctcaa |
834119 |
T |
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| Q |
425 |
tataggaaagcgcggtgagacttcgtatcatggtgaagaatgggaagatattggagatgaaatatacatgtctatgaatggtaacggttcaagttcaaat |
524 |
Q |
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| T |
834120 |
tataggaaagcgcggtgagacttggtatcatggtgaaggatgggaagatattggagatgaaatatacatgtctatgaatggtaacg------gttcaaat |
834213 |
T |
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| Q |
525 |
tcagaatctttgaatacaagagttagaaaagaggggaagagtccaataaactcttcactaaaacatgattctactctcgatgagaatgtaggaaa |
619 |
Q |
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| T |
834214 |
tcagaatctttgaatacaagagttagaaaaaaggggaagagtccaataaactcttcactaaaacatgattctactctcgatgagaatgtaggaaa |
834308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 812083 - 812225
Alignment:
| Q |
43 |
ttctccaaacatggaacttctgagttcattgacgaaagaagagattttagaagttctatctcatggtttatgtcatcagtgtgaaacccttgtgcatgat |
142 |
Q |
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| T |
812083 |
ttctccaacaatggaaattttgaattcattgacgaaagaagagattttagaggttctatctcatggtttatgtcaccactgtgaaacccttgttcatgat |
812182 |
T |
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| Q |
143 |
cgtatcagaagaacccttcataaaagtaagtaacactcttttc |
185 |
Q |
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| T |
812183 |
cgtctcataagaatgcctcataaaagtaagtaatactcttttc |
812225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 833673 - 833707
Alignment:
| Q |
7 |
tccaagaatattacaagcaatagacaaataatact |
41 |
Q |
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| T |
833673 |
tccaagaacattacaagcaatagacaaataatact |
833707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 812742 - 812791
Alignment:
| Q |
517 |
gttcaaattcagaatctttgaatacaagagttagaaaagaggggaagagt |
566 |
Q |
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| T |
812742 |
gttcaatttcagaatcttggaataaaaggattagaaaagaggggaagagt |
812791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 602
Target Start/End: Complemental strand, 34881793 - 34881709
Alignment:
| Q |
518 |
ttcaaattcagaatctttgaatacaagagttagaaaagaggggaagagtccaataaactcttcactaaaacatgattctactctc |
602 |
Q |
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||||| |||||||||| |||||| |||| ||| ||||||| |||| || ||| ||||||| || |||||||||||||| |||| |
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| T |
34881793 |
ttcaatttcagaatctctgaataaaagaattataaaagagtcgaagggttcaagaaactctatacaaaaacatgattctattctc |
34881709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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