View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_low_3 (Length: 386)
Name: NF19904_low_3
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 8264302 - 8264117
Alignment:
| Q |
11 |
gaagaaggattactttagttatggttgtcgaggttgaatcatgtttttgagaagaggtggtggagtagtggttgcaactgttcttggaggttgtcagagt |
110 |
Q |
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| T |
8264302 |
gaagaaggattactttagttatggttgtcgaggttgaatcatgtttttgagaagaggtggtggagtagtagttgcaactgttcttggaggttgtcagagt |
8264203 |
T |
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| Q |
111 |
tgagaaacctccaaaggataaatcggatggggtaacttatattatagtactatgaaaagagcgtgcttgataagaatttatttttg |
196 |
Q |
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| T |
8264202 |
tgagaaacctccgaaggataaatcggatggggtaacttatattacagtactatgaaaagagcgtgcttgataagaatttatttttg |
8264117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 8262743 - 8262666
Alignment:
| Q |
188 |
ttatttttgtaagtggcttcagtggggtgaaaactgtcccaaaacacatattccgaatcattggaacataaaggttca |
265 |
Q |
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| T |
8262743 |
ttatttttgtaagtgacttcagtggggtgaaaactgtcccaaaacacatattccgaatcattggaacataaaggttca |
8262666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 8272039 - 8271976
Alignment:
| Q |
192 |
ttttgtaagtggcttcagtggggtgaaaactgtcccaaaacacatattccgaatcattggaaca |
255 |
Q |
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| T |
8272039 |
ttttgtacatggcttctgtggggtgaaaactgtcccaaaacacatattctgaatcattggaaca |
8271976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 8245869 - 8245823
Alignment:
| Q |
205 |
ttcagtggggtgaaaactgtcccaaaacacatattccgaatcattgg |
251 |
Q |
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| T |
8245869 |
ttcagtagggtgaaaactgtcccaaaacacataatccaaatcgttgg |
8245823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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