View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_low_4 (Length: 385)
Name: NF19904_low_4
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 899043 - 898685
Alignment:
| Q |
12 |
gataattctagaagtggaacaataagttcttgattataaaactcttggtatttgacaaaagctaaaagtgattttatgataatgtcttgtcataatactt |
111 |
Q |
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| T |
899043 |
gataattatagaagtggaacaataagttcttgattataaaactcttggtatttgacaaaagctaaaagtgattttatgataatgtcttgtcacaatactt |
898944 |
T |
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| Q |
112 |
tcattccacaaaagaaagtgcaataattttgataaggttacctaaatagctaccatcgacattaaaaatggtgcaacaacgattagatgagttccattaa |
211 |
Q |
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| T |
898943 |
tcattccacaaaagaaagtgcaataattttgataaggttacctaaatagctaccatcgacattaaaaatggtgcaacaacgattagatgagttccattaa |
898844 |
T |
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| Q |
212 |
acccatacatcctcaagttttgttgtcagatatatagagatgcagggaatggagagtggcagacaacatgcgagcctccagtgcaagacgatatataggg |
311 |
Q |
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| T |
898843 |
acccatacatcctcaagttttgttgtcagatatatagagatgcagggaatggagagtggcagacaacatgcgagcctccagtgcaagacgatatataggg |
898744 |
T |
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| Q |
312 |
gtcgtggtatttgacaatcaactagagcttctgcttcctggaggcagttgtgagcatca |
370 |
Q |
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| T |
898743 |
gtcgtggtatttgacaatcaactagagcttctgcttcctggaggcagttgcgagcatca |
898685 |
T |
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