View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_low_5 (Length: 372)
Name: NF19904_low_5
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 45413501 - 45413136
Alignment:
| Q |
1 |
tgtcttttctcctggttgaatagtatttagtagtctcatacctccttctttaggtagcatgtcgtttctttacattcaagcaaattgtaccaagttttgc |
100 |
Q |
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| T |
45413501 |
tgtcttttctcccggttgaatagtatttagtagtctcatacctccttctttaggtagcatgtcgtttctttacattcaagcaaattgtaccaagttttgc |
45413402 |
T |
|
| Q |
101 |
tctttgattttgttttttaaagctcttgttccctcttcaacttctgaaccataggnnnnnnnnnnnnnnnnnnnnntaagacgtgctcatggaaaataaa |
200 |
Q |
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| T |
45413401 |
tctttgattttgttttttaaagctcttgttccctcttcaacttctgaaccataggaaaaataataaaaataaaaattaagacgtgctcatggaaa-taaa |
45413303 |
T |
|
| Q |
201 |
attgcttagtaagcgtgaaatattacacgtgggagctatgtgttgaatggagaagaaactttgaatatgatgtgttaacaaaattaaattgaatttattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
45413302 |
attgcttagtaagcgtgaaatattacacgtgggagctatgtgttgaatggagaagaaacttagaatatgatgtgttaac-aaattaaattgaatttattt |
45413204 |
T |
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| Q |
301 |
tgtgtccccaagacaggtgctcggcatcacactgtaccattaaaaaagtgtcattagatattcttcgaca |
370 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||||| |
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| T |
45413203 |
tgtgtccccaagacaggagctcggcatcacac--taccattaaaaaagtgtcattagacattgttcgaca |
45413136 |
T |
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