View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19904_low_8 (Length: 267)
Name: NF19904_low_8
Description: NF19904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19904_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 33011443 - 33011304
Alignment:
| Q |
10 |
tgagatgaagactcaaaatcttcccatgtgcccacggcaaatcctcatattctcttttcacaaactccgaaatagcctcctctgtcgagcctattttgtc |
109 |
Q |
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| T |
33011443 |
tgagatgaagactcaaaatcttcccatgtgcccacggcaaatcctcatattctcttttcacaaactccgaaatagcctcctctgtcgagcctattttgtc |
33011344 |
T |
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| Q |
110 |
tttcaattcagttattgccttgttaatcatctgcactcat |
149 |
Q |
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| T |
33011343 |
tttcaattcagttattgccttgttaatcatctgcactcat |
33011304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 33011255 - 33011205
Alignment:
| Q |
198 |
cagtaatgtagatagagagaaagagcgagggggtgcataccaaggcgtaag |
248 |
Q |
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| T |
33011255 |
cagtaatgtagatagagagaaagagcgagggggtgcataccaaggcgtaag |
33011205 |
T |
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