View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19905_high_3 (Length: 587)
Name: NF19905_high_3
Description: NF19905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19905_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 23934197 - 23934772
Alignment:
| Q |
1 |
ataatctcggttgcataattcgacagtaacaaccaacagaactataaactttgacaaatttgtgtataagcttctaataatgctaggaatattatatcat |
100 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934197 |
ataatctcgattgcataattcgacagtaacaacgaacagaactataaactttgacaaatttgtgtataagcttctaataatgctaggaatattatatcat |
23934296 |
T |
|
| Q |
101 |
cattccaaattattgttacacaaatatgacattaaacactgttgtattaaac---aactattttctccatcgagcagtatatagatacatacatgccgta |
197 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23934297 |
cattccaaattattgtcacacaaatatgacattaaacactgttgtattaaacttaaactattttctccgtcgagcagtatatagatacatacatgccgta |
23934396 |
T |
|
| Q |
198 |
aaacagtaatcaagaaactagtaatacataaaatgtcgaacctgtctactatgtacaggtcgctctcccatttctgaacagatagctgtaagttctgcct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934397 |
aaacagtaatcaagaaactagtaatacataaaatgtcgaacctgtctactatgtacaggtcgctctcccatttctgaacagatagctgtaagttctgcct |
23934496 |
T |
|
| Q |
298 |
cggaatcagcaatttcttgcctaagttgagctctagagcaatttgctttatctacctttcttctgtatacttctagacactcttgttcaagctcatacaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934497 |
cggaatcagcaatttcttgcctaagttgagctctagagcaatttgctttatctacctttcttctgtatacttctagacactcttgttcaagctcatacaa |
23934596 |
T |
|
| Q |
398 |
catcctatctttttcagactcagactcaccaacttcatgccatattatctagtttcgaaaaataaacgaagacaaacgataagaatttctccgaagttta |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934597 |
catcctatctttttcagactcagactcaccaacttcatgccatattatctagttttgaaaaataaacgaagacaaacgataagaatttctccgaagttta |
23934696 |
T |
|
| Q |
498 |
ccagatattcattgaaattgcagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
573 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934697 |
ccagatattcattgaaattgcagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
23934772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 240 - 494
Target Start/End: Original strand, 29707831 - 29708083
Alignment:
| Q |
240 |
tgtctactatgtacaggtcgctctcccatttctgaacagatagctgtaagttctgcctcggaatcagcaatttcttgcctaagttgagctctagagcaat |
339 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29707831 |
tgtctactatgtacaggtcgctctcccatttcagaacaaatagctataagtt-tgcctcggaatcagcaatttgttgcctaagttgagctctagagcaat |
29707929 |
T |
|
| Q |
340 |
ttgctttatctacctttcttctgtatacttctagacactcttgttcaagctcatacaacatcctatctttttcagactcagactcaccaacttcatgcca |
439 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29707930 |
ttgctttatctacctttcttctgtatacttctagacattcttgttcaagctcatacaccatcctatcttcttcagactcagactcaccaacttcatgcca |
29708029 |
T |
|
| Q |
440 |
tattatctagtttcgaaaaataaacgaagacaaacgataagaatttctccgaagt |
494 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
29708030 |
tattatctag-ttcgaaaaataaacgaagacaaacaataagaatttctccaaagt |
29708083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 236 - 448
Target Start/End: Complemental strand, 34234904 - 34234692
Alignment:
| Q |
236 |
aacctgtctactatgtacaggtcgctctcccatttctgaacagatagctgtaagttctgcctcggaatcagcaatttcttgcctaagttgagctctagag |
335 |
Q |
| |
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|||||||||| | || || |||||||| |||||| | ||||||||||||| |||||| ||||| ||||||||||| || || |||||||||||||| |
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| T |
34234904 |
aacctgtctaatgtgcactggtcgctcgcccattgcagaacagatagctgcaagttcagcctcacaatcagcaattaactgtcttagttgagctctagac |
34234805 |
T |
|
| Q |
336 |
caatttgctttatctacctttcttctgtatacttctagacactcttgttcaagctcatacaacatcctatctttttcagactcagactcaccaacttcat |
435 |
Q |
| |
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||| || | ||||||||| |||| || ||||| ||||||||||||||||| ||| ||| ||| || ||| | || | ||| | |||||||||||||| |
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| T |
34234804 |
ttattcgcctgatctaccttccttcgatacacttcaagacactcttgttcaagttcaaacagcattctgtctctatctggctccgcctcaccaacttcat |
34234705 |
T |
|
| Q |
436 |
gccatattatcta |
448 |
Q |
| |
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||| |||||||| |
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| T |
34234704 |
cccaaattatcta |
34234692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 44162927 - 44162982
Alignment:
| Q |
518 |
cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
573 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
44162927 |
cagataaagttggtttttacctgaagttcttgaagaagtgaaccacatgttgtttc |
44162982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 44189047 - 44189102
Alignment:
| Q |
518 |
cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
573 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
44189047 |
cagataaagttggtttttacctgaagttcttgaagaagtgaaccacatgttgtttc |
44189102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 6095221 - 6095276
Alignment:
| Q |
518 |
cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
573 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
6095221 |
cagataaagttggtttttacttgaagttcttgaagaagtgaaccacatgttgtttc |
6095276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 32719191 - 32719246
Alignment:
| Q |
518 |
cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
573 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
32719191 |
cagataaagttggtttttacctgaagttcttgaagaggtgaaccacatgttgtttc |
32719246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 32728176 - 32728231
Alignment:
| Q |
518 |
cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttc |
573 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
32728176 |
cagataaagttcgtttttacctgaagttcttgaagaggtgaaccacatgttgtttc |
32728231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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