View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19905_low_1 (Length: 789)

Name: NF19905_low_1
Description: NF19905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19905_low_1
NF19905_low_1
[»] chr7 (5 HSPs)
chr7 (13-380)||(3753085-3753452)
chr7 (412-690)||(3752775-3753053)
chr7 (13-380)||(4046786-4047153)
chr7 (412-679)||(4047185-4047452)
chr7 (507-628)||(9664309-9664430)
[»] chr6 (11 HSPs)
chr6 (499-670)||(6466373-6466544)
chr6 (489-637)||(6458406-6458554)
chr6 (499-640)||(6506526-6506667)
chr6 (480-619)||(6529220-6529359)
chr6 (499-619)||(6472058-6472178)
chr6 (499-603)||(6519604-6519708)
chr6 (507-636)||(6497721-6497850)
chr6 (511-601)||(6460857-6460947)
chr6 (511-619)||(6515107-6515215)
chr6 (507-601)||(7204144-7204239)
chr6 (507-601)||(7238895-7238990)
[»] chr4 (1 HSPs)
chr4 (507-628)||(13535333-13535454)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 3753452 - 3753085
Alignment:
Q  13 cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3753452 cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggaaaatggattggatac 3753353  T
Q  113 aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753352 aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg 3753253  T
Q  213 tcgaaagaagacaaagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3753252 tcgaaagaagacaaagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttataaaagggcttcctctaactaaaa 3753153  T
Q  313 agaatcttagatttgaagagggaatgtcgagagtcacaccaagatcactataggatgagataacatgg 380  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  3753152 agaatcttagatttgaagagggaatgtcaagagtcacaccaagatcactatatgatgagataacatgg 3753085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 412 - 690
Target Start/End: Complemental strand, 3753053 - 3752775
Alignment:
Q  412 aggaagaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagagaagaagagggtaggaaatagagagggaaaagtttgaggattt 511  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3753053 aggatgaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagaggagaagagggtaggaaatagagagggaaaagtttgaggattt 3752954  T
Q  512 gatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttgt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752953 gatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttgt 3752854  T
Q  612 gagaagaagtttgaagggtttgggaggactgttgaatgagtttgaggaaataggaaaggaacagaagatgatgaagaca 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3752853 gagaagaagtttgaagggtttgggaggactgttgaatgagtttgaggaaataggaaaggaagagaagatgatgaagaca 3752775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 4046786 - 4047153
Alignment:
Q  13 cagagacagggtaacaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatac 112  Q
    |||||| ||||||||||||||| |||||||||||||||||||||   |||| || |||||  ||   |||||| || ||||||| |||||||  ||||      
T  4046786 cagagatagggtaacaagagctaaatttatcaagaattttctcaccattggaatcaggaacaaccgcgatacgaataataccggaaaatggaccggattt 4046885  T
Q  113 aatctcagaaccatcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcg 212  Q
    || ||| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||| |      
T  4046886 aacctcggaaccatcatggttgaagttgattggtgaagaagtgtatatgatccatgtctgattgttattgagttgaagggtatatttggtttttttctta 4046985  T
Q  213 tcgaaagaagacaaagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaa 312  Q
    || || | ||||||||||| |||  |||||| ||||||||||||||| |   |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  4046986 tcaaatggagacaaagaaattatactatgaattgttgtgattgaaagaggtattggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaa 4047085  T
Q  313 agaatcttagatttgaagagggaatgtcgagagtcacaccaagatcactataggatgagataacatgg 380  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||    
T  4047086 agaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactataagatgaaataacatgg 4047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 412 - 679
Target Start/End: Original strand, 4047185 - 4047452
Alignment:
Q  412 aggaagaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagagaagaagagggtaggaaatagagagggaaaagtttgaggattt 511  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||| ||| |||||| |||||||||||||    
T  4047185 aggaagatattgtaagatctggtgaaaaaacttggtacaacattgctgttgaaaagaggagaagagggtatgaaacagatagggaagagtttgaggattt 4047284  T
Q  512 gatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttgt 611  Q
    ||  ||||||||||||||||||||| ||   |||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  4047285 gacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagtttgtagggagaggtgtggatagtaagttttgt 4047384  T
Q  612 gagaagaagtttgaagggtttgggaggactgttgaatgagtttgaggaaataggaaaggaacagaaga 679  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  4047385 gagaagaaatttgaagggtttggaaggacagttgaatgagtttgaggaaataggaaaggaacagaaga 4047452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 628
Target Start/End: Complemental strand, 9664430 - 9664309
Alignment:
Q  507 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 606  Q
    ||||||| ||| ||||||||||||||||||  |  ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  9664430 gatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtagatagaagat 9664331  T
Q  607 tttgtgagaagaagtttgaagg 628  Q
    || | |||||||| || |||||    
T  9664330 ttggagagaagaaattggaagg 9664309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 499 - 670
Target Start/End: Original strand, 6466373 - 6466544
Alignment:
Q  499 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 598  Q
    ||||||| ||||||||||| || || |||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  6466373 agtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtggggaggggtgtgga 6466472  T
Q  599 tagtaggttttgtgagaagaagtttgaagggtttgggaggactgttgaatgagtttgaggaaataggaaagg 670  Q
    ||| || ||| | |||||||||||||  ||||  |||||||| || |||||||| || || |||||||||||    
T  6466473 tagcagatttggagagaagaagtttgtggggtcagggaggaccgtggaatgagtctgtgggaataggaaagg 6466544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 489 - 637
Target Start/End: Original strand, 6458406 - 6458554
Alignment:
Q  489 gagagggaaaagtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtaggga 588  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||||    
T  6458406 gagagggagaagtttgaggatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttggga 6458505  T
Q  589 ggggtgtggatagtaggttttgtgagaagaagtttgaagggtttgggag 637  Q
    | || |  || || || ||  | ||||||||||||||||||| ||||||    
T  6458506 gtggcgatgagagaagattcggagagaagaagtttgaagggtctgggag 6458554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 499 - 640
Target Start/End: Original strand, 6506526 - 6506667
Alignment:
Q  499 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 598  Q
    ||||||| ||||||||||||||||| |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  6506526 agtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagtttgtaggcaggggtgtgga 6506625  T
Q  599 tagtaggttttgtgagaagaagtttgaagggtttgggaggac 640  Q
    ||| || ||| | |||||||| || || ||||  ||||||||    
T  6506626 tagcagatttggagagaagaatttggaggggtcagggaggac 6506667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 480 - 619
Target Start/End: Original strand, 6529220 - 6529359
Alignment:
Q  480 taggaaatagagagggaaaagtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagt 579  Q
    ||||||||||| || ||  ||| ||| ||||||||||| || || |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  6529220 taggaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagt 6529319  T
Q  580 ttgtagggaggggtgtggatagtaggttttgtgagaagaa 619  Q
    |||||||||||||||||||||| || ||| | ||||||||    
T  6529320 ttgtagggaggggtgtggatagcagatttggagagaagaa 6529359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 499 - 619
Target Start/End: Complemental strand, 6472178 - 6472058
Alignment:
Q  499 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 598  Q
    ||||||| ||||||||||||||||| |||||||||||||||  ||||||||| |  || |||| ||||||||||||||||||||||||||||||||||||    
T  6472178 agtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttgtagggaggggtgtgga 6472079  T
Q  599 tagtaggttttgtgagaagaa 619  Q
    ||| |  ||| ||||||||||    
T  6472078 tagcaaatttggtgagaagaa 6472058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 499 - 603
Target Start/End: Complemental strand, 6519708 - 6519604
Alignment:
Q  499 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 598  Q
    ||||||| ||||| |||||||| || ||||| |||||||||  |||||| || | |||||||||||||||||||||||||||||||||||||||| ||||    
T  6519708 agtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtagggaggggtttgga 6519609  T
Q  599 tagta 603  Q
    |||||    
T  6519608 tagta 6519604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 507 - 636
Target Start/End: Original strand, 6497721 - 6497850
Alignment:
Q  507 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 606  Q
    ||||||||||||||||| ||||  |||||||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||||| | ||||| || |    
T  6497721 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagat 6497820  T
Q  607 tttgtgagaagaagtttgaagggtttggga 636  Q
    |||  |||||||| || || |||| |||||    
T  6497821 ttttagagaagaatttggaggggtctggga 6497850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 511 - 601
Target Start/End: Complemental strand, 6460947 - 6460857
Alignment:
Q  511 tgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatag 601  Q
    ||||||||||||| |||| |||||| |||  ||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  6460947 tgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtttgtagggagtggtttggatag 6460857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 511 - 619
Target Start/End: Complemental strand, 6515215 - 6515107
Alignment:
Q  511 tgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggttttg 610  Q
    ||||||||||||| || |||||||||||||| ||||| |    ||||  |||||||||||||||||||||||| ||||||||||| ||||| || ||| |    
T  6515215 tgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaagaaagagtttgtggggaggggtgtagatagaagatttgg 6515116  T
Q  611 tgagaagaa 619  Q
     ||||||||    
T  6515115 ggagaagaa 6515107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 601
Target Start/End: Complemental strand, 7204239 - 7204144
Alignment:
Q  507 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtaggga-ggggtgtggatag 601  Q
    ||||| |||||||| || |||||||||||||||  ||||||||||  ||||||||||||||||||||||||  | || |||| |||||||||||||    
T  7204239 gatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 601
Target Start/End: Complemental strand, 7238990 - 7238895
Alignment:
Q  507 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtaggga-ggggtgtggatag 601  Q
    ||||| |||||||| || |||||||||||||||  ||||||||||  ||||||||||||||||||||||||  | || |||| |||||||||||||    
T  7238990 gatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 628
Target Start/End: Complemental strand, 13535454 - 13535333
Alignment:
Q  507 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 606  Q
    ||||||| ||| ||||||||||||||||||  |  ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  13535454 gatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtagatagaagat 13535355  T
Q  607 tttgtgagaagaagtttgaagg 628  Q
    || | |||||||| || |||||    
T  13535354 ttggagagaagaaattggaagg 13535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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