View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19905_low_4 (Length: 448)
Name: NF19905_low_4
Description: NF19905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19905_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 10028912 - 10028737
Alignment:
| Q |
9 |
attattctaagcaaatttatttaaacatattctaactaagcatttaagaaataaaaccacatttagattcagagtctctgtggatacaatactcttttta |
108 |
Q |
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| T |
10028912 |
attattctaagcaaatttatttaaacatattctaactaaacatttaagaaataaaaccacattcagattcagggtctctgtggatacaatactcttttta |
10028813 |
T |
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| Q |
109 |
ttatgaaaatatatcgtactttttgggttgtatcaagttttcggggctgtttctaaggacttgttgaaaattgaag |
184 |
Q |
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| T |
10028812 |
ttatgaaaatatatcgtacttttttggtcgtatcaagctttcggtgctgtttctaaggacttgttgaaaattgaag |
10028737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 10028476 - 10028304
Alignment:
| Q |
260 |
attcatcaccatgacaagtgaatgtcctccaaaaggtaacaaaataccatggccaacaagccctatacagggaattagaaagatgtgtgaatca--accg |
357 |
Q |
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| T |
10028476 |
attcatcaccatgactagtaaccgtcctccggaaggtaacaaaataccatggctaacaagccctatacatggaattagggagatgtgtgagtcaatactg |
10028377 |
T |
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| Q |
358 |
gagttggacagcattcttgaaaatcatggaaagaagcaaccattgatcatgggaacatttcattgaagattcaag |
432 |
Q |
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| T |
10028376 |
gaattggacaacattcttgaaaatcatggaaagaagcaaccattaat--gggaaacatttccttgaagattcaag |
10028304 |
T |
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