View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_10 (Length: 544)
Name: NF19906_high_10
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_10 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0117 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 45785970 - 45785456
Alignment:
| Q |
19 |
agcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgca |
118 |
Q |
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| T |
45785970 |
agcatatcttcagtcacgtaacataattacattatcacttgcaccaagagatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgca |
45785871 |
T |
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| Q |
119 |
ttgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttgatatctcccactgctctcgctgcctaattccatgggctgaatatgatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45785870 |
ttgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttgatatctcccactgctctcgctgcctaattccatgggctgaatatgatg |
45785771 |
T |
|
| Q |
219 |
gcatctttctaaatgaagtcgatcgagttttacgccctggtggttattggattttatctggaccaccaattaattggaataaacaccatagagggtggca |
318 |
Q |
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| T |
45785770 |
gcatctttctaaatgaagtcgatcgagttttacgccctggtggttattggattttatctggaccaccaattaattggaataaacaccatagagggtggca |
45785671 |
T |
|
| Q |
319 |
aagaaccaaaaaggacttgaatcaagagcagactaaaattgaaaaagttgctaaaagtctttgctggaataagcttatcgagaaagatgatattgcaatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45785670 |
aagaaccaaaaaggacttgaatcaagagcagactaaaattgaaaaagttgctaaaagtctttgctggaataagcttatcgagaaagatgatattgcaatt |
45785571 |
T |
|
| Q |
419 |
tggcaaaaacctataaaccatttggattgcagatctgctcgtaagctcgccacagaccgtcctttttgtggtccacaagaaaatccggacaaggcctggt |
518 |
Q |
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| T |
45785570 |
tggcaaaaacctataaaccatttggattgcagatctgctcgtaagctcgccacagaccgtcctttttgtggtccacaagaaaatccggacaaggcctggt |
45785471 |
T |
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| Q |
519 |
tcgtgcttccttcat |
533 |
Q |
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||||||||||||||| |
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| T |
45785470 |
tcgtgcttccttcat |
45785456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 66789 - 66606
Alignment:
| Q |
32 |
tcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattgattggtgtcc |
131 |
Q |
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|||||| ||||| | ||| | ||| |||||||||||||||| ||||||||||||||||| |||||||| ||| | |||||||||||| | |||||||| |
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| T |
66789 |
tcacgtgacatattaacagtgtcaattgcaccaagggatactcatgaagcacaagttcaatttgctcttgaaagaggtgttcctgcagttattggtgttt |
66690 |
T |
|
| Q |
132 |
tagcttccaagaggttacctttcccttcaagagcttttgatatctcccactgctctcgctgcctaattccatgggctgaatatg |
215 |
Q |
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| ||||| ||||| |||||||||||||||||||| ||||| || | || || ||||| || || ||||||||| ||||||||| |
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| T |
66689 |
ttgcttcaaagagattacctttcccttcaagagcctttgacatggcacattgttctcgttgtcttattccatggcctgaatatg |
66606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 226 - 449
Target Start/End: Complemental strand, 65779 - 65556
Alignment:
| Q |
226 |
tctaaatgaagtcgatcgagttttacgccctggtggttattggattttatctggaccaccaattaattggaataaacaccatagagggtggcaaagaacc |
325 |
Q |
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|||||||||||| ||| || || |||| |||||||| ||||||||| ||||||| ||||||||| | ||||| | | | | ||| ||| ||||||| |
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| T |
65779 |
tctaaatgaagttgatagaattctacgtcctggtgggtattggattctatctggtccaccaattcactggaagagatattggaaaggatgggaaagaaca |
65680 |
T |
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| Q |
326 |
aaaaaggacttgaatcaagagcagactaaaattgaaaaagttgctaaaagtctttgctggaataagcttatcgagaaagatgatattgcaatttggcaaa |
425 |
Q |
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||| | ||||||||| ||||||| || |||||||| || || |||||||| ||||| |||||||| | | ||||||| |||||||||||||||||| | |
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| T |
65679 |
aaagaagacttgaatgaagagcaaaccaaaattgagaatgtagctaaaagcctttgttggaataaaatagtggagaaaggtgatattgcaatttggcaga |
65580 |
T |
|
| Q |
426 |
aacctataaaccatttggattgca |
449 |
Q |
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|||| | ||| ||||| ||||||| |
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| T |
65579 |
aaccaaaaaatcatttagattgca |
65556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 12402993 - 12402890
Alignment:
| Q |
23 |
tatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattga |
122 |
Q |
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||||||| ||||||||||||| | || | ||| |||||||||| ||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||| |
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| T |
12402993 |
tatcttctgtcacgtaacatattaacggtgtcagttgcaccaagagatactcatgaagctcaagttcaatttgctcttgaacgaggtgttcctgcattga |
12402894 |
T |
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| Q |
123 |
ttgg |
126 |
Q |
| |
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|||| |
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| T |
12402893 |
ttgg |
12402890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 14243 - 14181
Alignment:
| Q |
109 |
tgttcctgcattgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttga |
171 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||| |
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| T |
14243 |
tgttcctgcattgattggtgtcttagcctccaagaggttaccattccattcaagagcttttga |
14181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 14309 - 14239
Alignment:
| Q |
19 |
agcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttc |
89 |
Q |
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||||||| |||| |||||||||||||| ||||||||| ||||| ||||||| |||||||||||||| |||| |
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| T |
14309 |
agcatatattcaatcacgtaacataataacattatcaattgcaacaagggacacacatgaagcacatgttc |
14239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 28639918 - 28639846
Alignment:
| Q |
57 |
ttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattgattggtgt |
129 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| |||||||| ||||| || ||||| || ||||||||||| |
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| T |
28639918 |
ttgcaccaagagatacacatgaagctcaagttcaatttgctcttgaacgaggagttccagctttgattggtgt |
28639846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 40829031 - 40828967
Alignment:
| Q |
233 |
gaagtcgatcgagttttacgccctggtggttattggattttatctggaccaccaattaattggaa |
297 |
Q |
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| T |
40829031 |
gaagttgatcgagttttaaggcctggtggattttggattttatctggccctccaattaattggaa |
40828967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 17755060 - 17754983
Alignment:
| Q |
57 |
ttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattgattggtgtcctag |
134 |
Q |
| |
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||||||| ||||| |||||||||||||||| |||||||| || ||| | ||||| ||||| | ||||||||||||| |
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| T |
17755060 |
ttgcacctagggactcacatgaagcacaagtacagtttgcacttgaaaggggtgtacctgctgtcattggtgtcctag |
17754983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 14186410 - 14186482
Alignment:
| Q |
57 |
ttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattgattggtgt |
129 |
Q |
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||||||||||||| | ||||||||||||||||| |||||| | || | |||||||||||| | |||||||| |
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| T |
14186410 |
ttgcaccaagggactctcatgaagcacaagttcaatttgctttggagagaggtgttcctgcaatcattggtgt |
14186482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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