View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19906_high_13 (Length: 518)

Name: NF19906_high_13
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19906_high_13
NF19906_high_13
[»] chr8 (3 HSPs)
chr8 (16-326)||(43654317-43654627)
chr8 (225-500)||(43658784-43659052)
chr8 (235-401)||(38640642-38640812)
[»] chr2 (6 HSPs)
chr2 (16-420)||(8363245-8363653)
chr2 (236-317)||(8365589-8365670)
chr2 (309-482)||(33357877-33358055)
chr2 (394-467)||(8363172-8363246)
chr2 (368-440)||(14636551-14636622)
chr2 (191-235)||(14636371-14636415)
[»] chr1 (3 HSPs)
chr1 (229-500)||(13016342-13016618)
chr1 (199-424)||(47323209-47323434)
chr1 (228-327)||(47326883-47326982)
[»] chr7 (3 HSPs)
chr7 (208-469)||(41455343-41455609)
chr7 (237-469)||(41451688-41451927)
chr7 (237-425)||(32355178-32355370)
[»] chr3 (4 HSPs)
chr3 (237-469)||(28703673-28703910)
chr3 (328-469)||(32893810-32893952)
chr3 (223-300)||(32893717-32893794)
chr3 (192-324)||(36611911-36612044)
[»] chr4 (4 HSPs)
chr4 (203-393)||(6799097-6799291)
chr4 (201-407)||(8996039-8996251)
chr4 (237-305)||(42528323-42528391)
chr4 (229-401)||(8986594-8986772)
[»] scaffold0067 (1 HSPs)
scaffold0067 (237-415)||(7921-8103)
[»] chr6 (2 HSPs)
chr6 (192-398)||(27074941-27075152)
chr6 (291-398)||(27078305-27078414)
[»] chr5 (3 HSPs)
chr5 (192-398)||(26049974-26050185)
chr5 (228-401)||(40254826-40254998)
chr5 (291-398)||(26053388-26053498)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 43654627 - 43654317
Alignment:
Q  16 atcatatccggttgaggcagattagccaaggagacttacctgactcttaagcttacaaatagaatgtaaaccccccacatttgtacataccggtaacatt 115  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||     
T  43654627 atcatattcggttgaggcagattagctaaggagacttacctgactctttagcttacaaatagaatgtaaaccccccacatttgtatataccagtaacatc 43654528  T
Q  116 aacaaactatgtggtgtatgctacaaagcctgagtgccggtaaatacggaagaagtgaaatcatcatgcttgttaccattgtcataatcgtctccagcca 215  Q
    ||||||||||||||||||||| |||||||| ||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  43654527 aacaaactatgtggtgtatgcgacaaagccggagcgctggtaaataaggaagaagtgaaatcatcatgctcgttaccattgtcataatcgtctccaacca 43654428  T
Q  216 taattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaacta 315  Q
    |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  43654427 taattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacataaaacatgaggcgtgacaatgtcactgaacta 43654328  T
Q  316 aggaattatcc 326  Q
    |||||||||||    
T  43654327 aggaattatcc 43654317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 225 - 500
Target Start/End: Complemental strand, 43659052 - 43658784
Alignment:
Q  225 agattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattat 324  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||||| |||||||| ||||| | ||||| ||||||||||||| ||||||||||||||    
T  43659052 agattgttgtttgcggataactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcatgacaatgtcactaaactaaggaattat 43658953  T
Q  325 ccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacagactcaatgac 420  Q
    |||    |||||||||||||| | ||||||||| ||||||||||  ||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  43658952 ccgcagaattgcgcaactcccccagagtacaaccggttcttctcgacggtaagcgtaccgaagctatcaggacacgagaaaaatacacagactcaatgac 43658853  T
Q  421 tcagg-tcttagtaattttgtaacactcaaagaggtagctttgaagaaaatggtttctaactcacataatttcacgtaatg 500  Q
    ||||| ||||||||||            ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  43658852 tcaggctcttagtaat------------aaagaagtagctttgaagaaaatggtttctaactcacttaatttcacgtaatg 43658784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 235 - 401
Target Start/End: Original strand, 38640642 - 38640812
Alignment:
Q  235 tcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----att 330  Q
    |||||||||| |||||||||||| ||||||||| || | ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||    |||    
T  38640642 tcgcggatgactgaaggatcacaacctgcaaaataataaaataaaacgtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaatt 38640741  T
Q  331 gcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaa 401  Q
    | ||||||||| | ||||||||||||||| ||||  || ||| | ||||||| ||||||| ||||||||||    
T  38640742 gtgcaactcccccagagtacaacaggttcatctcgtcgataatcatatcgaggctatcagaacacgagaaa 38640812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 8363653 - 8363245
Alignment:
Q  16 atcatatccggttgaggcagattagccaaggagacttacctgactcttaagcttacaaatagaatgtaaaccccccacatttgtacataccggtaacatt 115  Q
    ||||||| || ||||||||||||||  |||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||     
T  8363653 atcatattcgcttgaggcagattagttaaggagacttacctgaatctttagcatacaaatagaatgtaaaccctccacatttgtacataccagtaacatc 8363554  T
Q  116 aacaaactatgtggtgtatgctacaaagcctgagtgccggtaaatacggaagaagtgaaatcatcatgcttgttaccattgtcataatcgtctccagcca 215  Q
    | |||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  8363553 agcaaactatatggtgtatgcgacaaagcctgagtgccggtaactgcggaagaagtgaaatcatcatacttgttaccattgtcataatcttctccagtca 8363454  T
Q  216 taattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaacta 315  Q
    |||||| ||||||||||    ||||| |  |||||||||||| |||||||||||||| |||||||  ||||||| || ||||||| ||||||||||||||    
T  8363453 taattccttagattgttaaatgcggaaggctgaaggatcacaacctgcaaaacaagaaaatgaaaggtaaaacctgatgcgtgactatgtcactgaacta 8363354  T
Q  316 aggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacaga 411  Q
    ||||||||||||    |||||||||||||  | |||||||||||| || |||||| ||||| |||| |||| ||||||||||||||||||||||||||||    
T  8363353 aggaattatccgcagaattgcgcaactcctccagagtacaacagggtcatctcagaggtaatcgtaccgaggctatcaggacacgagaaaaatacacaga 8363254  T
Q  412 ctcaatgac 420  Q
     ||||||||    
T  8363253 ttcaatgac 8363245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 8365670 - 8365589
Alignment:
Q  236 cgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaag 317  Q
    ||||||||| |||||||||||| |||| |||||||||  |||||| |||||||| |||||||||| ||||||||||||||||    
T  8365670 cgcggatgactgaaggatcacaacctgaaaaacaagaacatgaaaaataaaacctgaggcgtgactatgtcactgaactaag 8365589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 482
Target Start/End: Complemental strand, 33358055 - 33357877
Alignment:
Q  309 tgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaat 404  Q
    |||||||||||||||||||    |||||||||||||  | ||||||||||||||| |||| ||| ||| | || ||||  |||||| ||||||| |||||    
T  33358055 tgaactaaggaattatccgtagaattgcgcaactcctccagagtacaacaggttcatctcggcgataatcataccgaggttatcagaacacgag-aaaat 33357957  T
Q  405 acacagactcaatgactcag-gtcttagtaattttgtaacactcaaagaggtagctttgaaga-aaatggtttctaactc 482  Q
    | ||||||||||| ||||||   |||| || |||||||||||  ||||| ||||||||||||| ||| ||||| ||||||    
T  33357956 atacagactcaatcactcagacacttaatatttttgtaacaccgaaagaagtagctttgaagataaaaggtttgtaactc 33357877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 8363246 - 8363172
Alignment:
Q  394 acgagaaaaatacacagactcaatgactc-aggtcttagtaattttgtaacactcaaagaggtagctttgaagaa 467  Q
    |||||||||||||||||| |||||||||| ||  ||||||| |||||||||||  ||||| ||||||||||||||    
T  8363246 acgagaaaaatacacagattcaatgactcaagcacttagtatttttgtaacaccgaaagaagtagctttgaagaa 8363172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 14636551 - 14636622
Alignment:
Q  368 ggtaagcgtatcgagactatcaggacacgagaaaaatacacagactcaatgactcagg-tcttagtaattttgt 440  Q
    ||||||||||  |||||||||| |||||||  | |||||||| |||||||||||||||  ||||||||||||||    
T  14636551 ggtaagcgtagtgagactatcaagacacga--ataatacacaaactcaatgactcaggcacttagtaattttgt 14636622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 14636371 - 14636415
Alignment:
Q  191 ccattgtcataatcgtctccagccataattcattagattgttgtt 235  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||    
T  14636371 ccattgttagaatcctctccagccataattccttagattgttgtt 14636415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 229 - 500
Target Start/End: Original strand, 13016342 - 13016618
Alignment:
Q  229 tgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg- 327  Q
    |||| ||||||||||| | |||||||| | |||||||||  ||| ||| |||| ||||| | ||||||||||||||||||||||||||||||||||| |     
T  13016342 tgttattcgcggatgactaaaggatcataacctgcaaaaacagaaaataaaacgtaaaatctgaggcgtgacaatgtcactgaactaaggaattatctgc 13016441  T
Q  328 ---attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacagactcaatgactcag 424  Q
       |||||| |||| || |  ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| ||    
T  13016442 agaattgcgtaacttccccatagtacaacaggttcttctcggcggtaagcgtacggagactatcaggacacgagaaaaatacacaaactcaatgactgag 13016541  T
Q  425 g-tcttagtaattttgtaacactcaaagaggtagctttgaagaaaatggtttctaactcacataatttcacgtaatg 500  Q
      | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  13016542 acttttagtaattttgtaacacttaaagaagtagctttgaagaaaatggtttctaactcacttaatttcacgtaatg 13016618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 199 - 424
Target Start/End: Complemental strand, 47323434 - 47323209
Alignment:
Q  199 ataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtg 298  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||  |||||||    |||||    
T  47323434 ataatcgtctccagccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaataaaaagtaaaacc---tgcgtg 47323338  T
Q  299 acaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgta-tcgagactatcaggac 393  Q
    || ||||||| ||||||||||||||||||    ||||||||| ||||   |||||||||| ||||||||| ||||||||||||  |||| ||||||||||    
T  47323337 actatgtcaccgaactaaggaattatccgcaaaattgcgcaattccccaagagtacaacatgttcttctcggcggtaagcgtacccgag-ctatcaggac 47323239  T
Q  394 acgagaaaaatacacagactca-atgactcag 424  Q
    ||  ||||||||||||| |||| |||||||||    
T  47323238 ac--gaaaaatacacaggctcagatgactcag 47323209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 47326982 - 47326883
Alignment:
Q  228 ttgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg 327  Q
    |||||||||||||||||  ||||||||||| |||||||||||||| | | ||   |||||   |||||||||| ||||||| ||||||||||| ||||||    
T  47326982 ttgttgttcgcggatgacagaaggatcacaacctgcaaaacaagaaagtaaagagtaaaatttgaggcgtgactatgtcacagaactaaggaaatatccg 47326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 208 - 469
Target Start/End: Original strand, 41455343 - 41455609
Alignment:
Q  208 tccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtca 307  Q
    ||||| |||||||| |||||||||||   |||||||| |||||||||| | ||| |||||||||| ||| |||  ||||| | |||||||||| ||||||    
T  41455343 tccagtcataattccttagattgttgactgcggatgactgaaggatcataacctacaaaacaagaaaataaaaagtaaaatctgaggcgtgactatgtca 41455442  T
Q  308 ctgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaa 403  Q
    ||||||||||||||||||||    |||||||||||||| |  |||||||||||||| |||| | ||||| | |  |||| ||||||||||||||||||||    
T  41455443 ctgaactaaggaattatccgcagaattgcgcaactcccccaaagtacaacaggttcatctcggaggtaatcattccgaggctatcaggacacgagaaaaa 41455542  T
Q  404 tacacagactcaatgactcagg-tcttagtaattttgtaacactcaaagaggtagctttgaagaaaa 469  Q
    ||||||||||||||||||||||  ||||||| |||||||||||| ||||| ||||||||||||||||    
T  41455543 tacacagactcaatgactcaggcacttagtatttttgtaacactgaaagaagtagctttgaagaaaa 41455609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 237 - 469
Target Start/End: Original strand, 41451688 - 41451927
Alignment:
Q  237 gcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 332  Q
    |||||||| |||||||||| | |||||||||||||| ||| |||  ||||||  |||||||||| |||||||| |||||||||||||||||    ||||     
T  41451688 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacatgaggcgtgactatgtcactaaactaaggaattatccgcagaattgt 41451787  T
Q  333 gcaact-ccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacac-gagaaaaatacacagactcaatgactcag-gtctt 429  Q
    |||||| ||| | ||||||||||||||| ||||  |||||| | |  |||| |||||||||||| ||||||||||||||||||||| |||||||   |||    
T  41451788 gcaactccccccagagtacaacaggttcatctcgacggtaatcattccgaggctatcaggacacagagaaaaatacacagactcaacgactcagacactt 41451887  T
Q  430 agtaattttgtaacactcaaagaggtagctttgaagaaaa 469  Q
    |||| |||||||||||| ||||| ||||||||||||||||    
T  41451888 agtatttttgtaacactgaaagaagtagctttgaagaaaa 41451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 237 - 425
Target Start/End: Complemental strand, 32355370 - 32355178
Alignment:
Q  237 gcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 332  Q
    |||||||| |||||||||| | |||||||||||||| ||| |||  ||||||| ||||||||||||| ||||||||||||| |||||| ||    ||| |    
T  32355370 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggcgtgacaatatcactgaactaagaaattattcgcagaattac 32355271  T
Q  333 gcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacagactcaatgactcagg 425  Q
    |||||| |  | ||||||||||||||| ||||  || ||| | ||||||  ||||||| |||||||||||||| ||||||||||| |||||||    
T  32355270 gcaacttctccagagtacaacaggttcatctcgacgataatcatatcgaagctatcagaacacgagaaaaatatacagactcaattactcagg 32355178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 469
Target Start/End: Original strand, 28703673 - 28703910
Alignment:
Q  237 gcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 332  Q
    |||||||| |||||||||| | |||||||||||||| ||| |||  |||||   ||||| |||  ||||||||||||||||||||||||||    |||||    
T  28703673 gcggatgagtgaaggatcataacctgcaaaacaagaaaataaaaagtaaaatttgaggcatgattatgtcactgaactaaggaattatccgcagaattgc 28703772  T
Q  333 gcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacagactcaatgactcagg-tcttag 431  Q
    ||||||||| |  ||||||||| |||| |||| |||||||  ||  |||| |||||||||||||||||||||||||||||||||||| |||||  |||||    
T  28703773 gcaactcccccaaagtacaacaagttcatctcggcggtaatagttccgaggctatcaggacacgagaaaaatacacagactcaatgattcaggcacttag 28703872  T
Q  432 taattttgtaacactcaaagaggtagctttgaagaaaa 469  Q
    || |||||||||||| ||||| ||||||||||||||||    
T  28703873 tatttttgtaacactgaaagaagtagctttgaagaaaa 28703910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 328 - 469
Target Start/End: Original strand, 32893810 - 32893952
Alignment:
Q  328 attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacagactcaatgactcag-gt 426  Q
    |||||||||||||| | ||||||||||||||| |||| ||| ||| | || |||| ||||||| |||||||||||||| ||||||||||| ||||||       
T  32893810 attgcgcaactcccccagagtacaacaggttcatctcggcgataatcataccgaggctatcagaacacgagaaaaatatacagactcaatcactcagaca 32893909  T
Q  427 cttagtaattttgtaacactcaaagaggtagctttgaagaaaa 469  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||    
T  32893910 cttagtatttttgtaacactgaaagaagtagctttgaagaaaa 32893952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 32893794 - 32893717
Alignment:
Q  223 ttagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgac 300  Q
    ||||||||||||| |||||||| |||||||||| | |||||||||||||| ||| | |  ||||||| ||||||||||    
T  32893794 ttagattgttgtttgcggatgactgaaggatcataacctgcaaaacaagaaaataacaagtaaaacctgaggcgtgac 32893717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 324
Target Start/End: Original strand, 36611911 - 36612044
Alignment:
Q  192 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccag 291  Q
    |||||| | |||| |||||| ||||||||| ||||||||  |   || ||||| |||||||||||| |||||||||||| | |||||||| ||||| |      
T  36611911 cattgttagaatcatctccatccataattccttagattgcggaaggcagatgactgaaggatcacaacctgcaaaacaataaaatgaaacgtaaaatcta 36612010  T
Q  292 aggcgtgac-aatgtcactgaactaaggaattat 324  Q
    ||||||||| |  ||||||| |||||| ||||||    
T  36612011 aggcgtgactaccgtcactggactaagaaattat 36612044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 203 - 393
Target Start/End: Complemental strand, 6799291 - 6799097
Alignment:
Q  203 tcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaa 302  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||| ||||||||| |||| ||| |||  ||||||| | |||||||| |    
T  6799291 tcgtctccagccataattccttaaattgttgtttgcggatgactgaaggatcacaacctgcaaaataagaaaataaaaagtaaaacctgtggcgtgacta 6799192  T
Q  303 tgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggac 393  Q
    |||||||||||||||||||||||||    ||||||| |||||| |  ||||| ||||||||||||||||||||| |||| |||| ||||||||||    
T  6799191 tgtcactgaactaaggaattatccgcagaattgcgcgactcccccaaagtactacaggttcttctcagcggtaatcgtaccgaggctatcaggac 6799097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 407
Target Start/End: Original strand, 8996039 - 8996251
Alignment:
Q  201 aatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgac 300  Q
    |||| ||| |||||||||||| ||||||||||||  |||||||| |||||||||||| ||||||||||||   ||| |||| ||||| |  ||| ||||     
T  8996039 aatcttcttcagccataattccttagattgttgtatgcggatgactgaaggatcacatcctgcaaaacaatgaaataaaacgtaaaatctaaggtgtgat 8996138  T
Q  301 aa--tgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggaca 394  Q
     |  |||||||| ||||||||||||||||    ||||| |||||||| |  | |||||||||||| || | ||||||| |||| | | |||||||| | |    
T  8996139 tacgtgtcactggactaaggaattatccgcagaattgcacaactcccccaaaatacaacaggttcatcccggcggtaatcgtaccaaaactatcagaata 8996238  T
Q  395 cgagaaaaataca 407  Q
    ||||||| |||||    
T  8996239 cgagaaatataca 8996251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 42528323 - 42528391
Alignment:
Q  237 gcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgt 305  Q
    |||||||| |||||||||||| |||||||||||||| |||||||| ||||||  |||||||||| ||||    
T  42528323 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaacttgaggcgtgactatgt 42528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 229 - 401
Target Start/End: Original strand, 8986594 - 8986772
Alignment:
Q  229 tgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaa--tgtcactgaactaaggaattatcc 326  Q
    |||||| || ||||||  ||||||||||| ||||||||||||   ||| |||| ||||| | |||||||||| |  |||||||| |||||||||||||||    
T  8986594 tgttgtacgtggatgaccgaaggatcacaccctgcaaaacaatgaaataaaacgtaaaatctgaggcgtgactacgtgtcactggactaaggaattatcc 8986693  T
Q  327 g----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaa 401  Q
    |    |||||||||||||| | |  ||||| |||||| || | ||||||| | || |||| |||| || ||||||||||    
T  8986694 gtagaattgcgcaactcccccagcatacaaaaggttcatcccggcggtaatcataccgaggctattagaacacgagaaa 8986772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 237 - 415
Target Start/End: Complemental strand, 8103 - 7921
Alignment:
Q  237 gcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 332  Q
    ||||||||  ||||||||| | |||||||||||||| ||| |||  ||||||| |||| ||||| ||||||||||||||||||||||||||    |||||    
T  8103 gcggatgacggaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggtgtgactatgtcactgaactaaggaattatccgcaaaattgc 8004  T
Q  333 gcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaaaatacacagactca 415  Q
    ||||||||| | ||||||||||||||| |||| ||| ||| | || ||||  |||||| ||||||||||||||||||||||||    
T  8003 gcaactcccccagagtacaacaggttcatctcggcgataatcataccgagtttatcagaacacgagaaaaatacacagactca 7921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 192 - 398
Target Start/End: Complemental strand, 27075152 - 27074941
Alignment:
Q  192 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaaca-taaaacca 290  Q
    |||||||| |||  |||||||||||||||| |||||||||||   |||||||| ||||| |||||| |||||||||||| | | | |||   |||||||     
T  27075152 cattgtcagaattttctccagccataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacaataaactaaaaaggtaaaaccc 27075053  T
Q  291 -gaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagact 385  Q
     |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || |||||||||| |||||| |||||||||||| |||| ||    
T  27075052 tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggt-cttctcggcggtaagcgtaccgaggct 27074954  T
Q  386 atcaggacacgag 398  Q
    |||| ||||||||    
T  27074953 atcaagacacgag 27074941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 27078414 - 27078305
Alignment:
Q  291 gaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagacta 386  Q
    |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||  ||||||| |||||||||||| |||| |||    
T  27078414 gaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacag--tcttctcggcggtaagcgtaccgaggcta 27078317  T
Q  387 tcaggacacgag 398  Q
    ||| ||||||||    
T  27078316 tcaagacacgag 27078305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 398
Target Start/End: Complemental strand, 26050185 - 26049974
Alignment:
Q  192 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaaca-taaaacca 290  Q
    |||||||| |||  |||||||||||||||| |||||||||||   |||||||| ||||| |||||| |||||||||||  | | | |||   |||||||     
T  26050185 cattgtcaaaattttctccagccataattccttagattgttgaaagcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccc 26050086  T
Q  291 -gaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagact 385  Q
     |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || |||||||||| |||||| |||||||||||| |||| ||    
T  26050085 tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggt-cttctcggcggtaagcgtaccgaggct 26049987  T
Q  386 atcaggacacgag 398  Q
    |||| ||||||||    
T  26049986 atcaagacacgag 26049974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 401
Target Start/End: Complemental strand, 40254998 - 40254826
Alignment:
Q  228 ttgttgttcgcggatgattgaaggatcacagcctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatcc- 326  Q
    ||||||||||||||||| |||||||||||| |||| |||| || | ||| |||| ||||||   ||||||||| |||||||||||||||||||||||||     
T  40254998 ttgttgttcgcggatgactgaaggatcacaacctgtaaaataataaaataaaacgtaaaac---aggcgtgactatgtcactgaactaaggaattatcca 40254902  T
Q  327 ---gattgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagactatcaggacacgagaaa 401  Q
        |||||||||||||  |  |||||||||||||| |||| ||| ||| |  || ||||||||||  ||||||||||    
T  40254901 cagaattgcgcaactcctccatagtacaacaggttcatctcggcgataatc--atagagactatcaaaacacgagaaa 40254826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 26053498 - 26053388
Alignment:
Q  291 gaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctcagcggtaagcgtatcgagacta 386  Q
    |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||| ||||||| |||||||||||| |||| |||    
T  26053498 gaggcgtgactaagtcactggactaaggaattatccgtagaattgcgcaactcccccagaatacaacagg-tcttctcggcggtaagcgtaccgaggcta 26053400  T
Q  387 tcaggacacgag 398  Q
    |||  |||||||    
T  26053399 tcaaaacacgag 26053388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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