View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_high_14 (Length: 506)
Name: NF19906_high_14
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_14 |
 | |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 4487492 - 4487193
Alignment:
| Q |
19 |
aatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487492 |
aatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttata |
4487393 |
T |
|
| Q |
119 |
ttgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487392 |
ttgatataagagtagtagtgttgaattgatctagttatgtcctcttttttacactttttgctagggggtatattttttgttgagaaaacataggccgagg |
4487293 |
T |
|
| Q |
219 |
ttatcgggtttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487292 |
ttatcgggtttctattttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
4487193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 309 - 491
Target Start/End: Complemental strand, 4487176 - 4486993
Alignment:
| Q |
309 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487176 |
tgttgtgttggaggttttgcgggtttttgtgggtctgctggctgcatttttacttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcatag |
4487077 |
T |
|
| Q |
408 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487076 |
gtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtattttgctttattttttgggtctttgctagttctgtg |
4486993 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 19023074 - 19022871
Alignment:
| Q |
27 |
attcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatata |
126 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19023074 |
attcaaaacttgttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatata |
19022975 |
T |
|
| Q |
127 |
agagtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcggg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
19022974 |
agagtagtagtgttgaattgatctagttatgtcctcttttttccactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcagg |
19022875 |
T |
|
| Q |
227 |
tttc |
230 |
Q |
| |
|
|||| |
|
|
| T |
19022874 |
tttc |
19022871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 22066981 - 22066770
Alignment:
| Q |
19 |
aatcttccattcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttata |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22066981 |
aatcttccattcaaaacttgttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttata |
22066882 |
T |
|
| Q |
119 |
ttgatataagagtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22066881 |
ttgatataagagtagtagtgttgaattgatctagttatgtcctcttttttctactttttgctagggggtatattatttgttgagaaaacataggccgagg |
22066782 |
T |
|
| Q |
219 |
ttatcgggtttc |
230 |
Q |
| |
|
||||| |||||| |
|
|
| T |
22066781 |
ttatcaggtttc |
22066770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 309 - 491
Target Start/End: Complemental strand, 19022601 - 19022423
Alignment:
| Q |
309 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||||| ||||||| ||| |
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|
| T |
19022601 |
tgttgtgttggaggttttgcgggtttttgtcggtctgcaggctgcgtttttacttgatgtgcagtgcaattttttctttgttgtgtgggggttgt----- |
19022507 |
T |
|
| Q |
408 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
491 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19022506 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtctgtgctacttctgtg |
19022423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 309 - 477
Target Start/End: Complemental strand, 22066483 - 22066319
Alignment:
| Q |
309 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
407 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22066483 |
tgttgtgttggagattttgcgggtttttgtgggtctgcaggctgcgtttttacaatatgtgcagtgcagttttttctttgttgcgtgggggctgt----- |
22066389 |
T |
|
| Q |
408 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtct |
477 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22066388 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtct |
22066319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 22066590 - 22066500
Alignment:
| Q |
228 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22066590 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
22066500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 19022714 - 19022623
Alignment:
| Q |
228 |
ttctgttttgtgaattagattcttgtcttatcatttttt-ctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19022714 |
ttctgttttgtgaattagattcttgtcttatcatttttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
19022623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 22619889 - 22619698
Alignment:
| Q |
39 |
tttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg |
138 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22619889 |
ttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg |
22619790 |
T |
|
| Q |
139 |
ttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc |
230 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22619789 |
ttgaattgatctagttatgtcctcttttttccactttttgccaaggggtatattttttgttgagaaaacataagtcgaggttatcgggtttc |
22619698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 311 - 491
Target Start/End: Complemental strand, 10316831 - 10316650
Alignment:
| Q |
311 |
ttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcataggt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10316831 |
ttgtgttggaggttttgcgggtttttgtgggtctgtaggctgtgtttttacttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggt |
10316732 |
T |
|
| Q |
410 |
ccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
491 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
10316731 |
ccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatttattttttgggtctatgctacttctgtg |
10316650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 228 - 451
Target Start/End: Original strand, 13514 - 13759
Alignment:
| Q |
228 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg--------- |
318 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
13514 |
ttctgttttgtgaaatagattcctgtcttatctttttttcttttgaatggaacacaaactagaggactgcgttaggtgttgtgttgtgttgtggctgctg |
13613 |
T |
|
| Q |
319 |
------------gaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcat |
405 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||| ||||||| | || || ||||||||| |||||||||||||||||||| |
|
|
| T |
13614 |
cctgttgtgtttgaggtttcgcgggtttttgtgggtctgctagctgcgtttttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcat |
13713 |
T |
|
| Q |
406 |
aggtccagcaggttgttgggtgatcaataggcgaaattacagtggc |
451 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||| ||||| |
|
|
| T |
13714 |
aggtccagcaggttgtggagtgatcaataggcataattacggtggc |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 32091515 - 32091584
Alignment:
| Q |
76 |
gttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaatt |
145 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
32091515 |
gttgagtattaattttctctatgtggcacagttgatctatatattgatataagagtagtagtgctgaatt |
32091584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 32091979 - 32092045
Alignment:
| Q |
231 |
tgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggact |
295 |
Q |
| |
|
||||||||||||||||||| | |||| | || ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32091979 |
tgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggact |
32092045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 12287209 - 12287137
Alignment:
| Q |
228 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
298 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | || ||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
12287209 |
ttctcttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactacaggactgtg |
12287137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 9391978 - 9391906
Alignment:
| Q |
228 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
298 |
Q |
| |
|
|||||||||||||||||||||| | | || | |||||| |||||| |||||||||||||||| | ||||||| |
|
|
| T |
9391978 |
ttctgttttgtgaattagattcctattttttaatttttgttctttctaatggaacacaaactacaagactgtg |
9391906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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