View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_16 (Length: 502)
Name: NF19906_high_16
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 3 - 486
Target Start/End: Original strand, 3272725 - 3273209
Alignment:
| Q |
3 |
tcagtaaccctttccacacctcttatgttactcaagtagtaatatctcatccaattttgcagtatgcatcaatcaatatactatgagccatactgattat |
102 |
Q |
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| T |
3272725 |
tcagtaaccctttccacacctcttatgttactcaagtagtaagatctcatccaattttgcagtatgcatcaatcaatatactatgagccatactgattat |
3272824 |
T |
|
| Q |
103 |
atcaatgactgcagttcttcctcttgtcgcaactcgttgagccgcctcttagcatagattgtgaaaaatattgttgtagctacagctatgcagaagccaa |
202 |
Q |
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| T |
3272825 |
atcaatgactgcagttcttcctcttgtcgcaactcgttgagccgcctcttagcatagattgtgaaaaatattgttgtagctacagctatgcagaagccaa |
3272924 |
T |
|
| Q |
203 |
caacattgaaggcgatttgtggagcagataatccatgtgttttgtgtgagacattagccaatgctcgtatcagaattccgctgtagagttagacagttat |
302 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3272925 |
caacattgaaggcaatttgtggagcagataatccatgtgttttgtgtgagacattagccaatgcccgtatcagaattccgctgtagagttagacagttat |
3273024 |
T |
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| Q |
303 |
agctagtaatgtatttataaaaactattgaaacaaaccaacattgaaaatggcttacaacataagcatatgagttt-aaaacattgtaaaacaagatagg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3273025 |
agctagtaatgtatttataaaaactattgaaacaaaccaacattgaaaatggcttacaacataagcatatgagtttaaaaacattgtaaaacaagatagg |
3273124 |
T |
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| Q |
402 |
gaaagagagatcctacgtgtaaatcgaagcaattacttctggtaacattcctgccaaagatccacacaagtaaggaccatattga |
486 |
Q |
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| T |
3273125 |
gaaagagagatcctacgtgtaaatcgaagcaattacttctggtaacattcctgccaaagatccacacaagtaaggaccatattga |
3273209 |
T |
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