View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_20 (Length: 445)
Name: NF19906_high_20
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 121 - 394
Target Start/End: Original strand, 4118946 - 4119226
Alignment:
| Q |
121 |
agaatattcttaactgatcatagcagcctgctcacacattttagtttacacttcttattttagagaaatgcctttcttttatgagcactg----atatcc |
216 |
Q |
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| T |
4118946 |
agaatattcttaactgatcatagcagcctgctcacacattttagtttacacttcttattttagagaaatgcctttcttttatgagcactggtatatatcc |
4119045 |
T |
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| Q |
217 |
aaattgaatgtcaaacatttttaaagatcagactgcaaacctgactgggagaacagaagaaatgtattagattcacatatagtcgcatat----actctt |
312 |
Q |
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| T |
4119046 |
aaattgaatgtcaaacatttttaaagatcagactgcaaacctgactgggagaacagaagaaatgtattagattcacata--gtcacatatctgaactctt |
4119143 |
T |
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| Q |
313 |
cttgaagcatactgtgattgccaagattgtcttcatttcgaatgccttctc-gaaaacatggttgattcccatccaataattt |
394 |
Q |
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| T |
4119144 |
cttgaagcatactgtgattgccaatattgtcttcatttcgaatgccttctctgaaaacatggttgattcccatccaataattt |
4119226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 4118835 - 4118910
Alignment:
| Q |
41 |
tttatataatatgttactgcagttcttctatcctgccacttatttacttaatgtgatactgatgtctcctacactg |
116 |
Q |
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| T |
4118835 |
tttatataatatgttactgcagttcttctatcctgccacttatttacttaatgtggtactgatgtctcctacactg |
4118910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 385
Target Start/End: Original strand, 4122161 - 4122310
Alignment:
| Q |
238 |
taaagatcagactgcaaacctgactgggagaacagaagaaatgtattagattcacatatagtcgcatata----ctcttcttgaagcatactgtgattgc |
333 |
Q |
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| T |
4122161 |
taaagatcagactgcaaacctgattgcgtgaattgaagaaatgtattagactcacata--gccacatagataaactcttcttgaaacatactgtgattg- |
4122257 |
T |
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| Q |
334 |
caagattgtcttcatttcgaatgccttc-tcgaaaacatggttgattcccatc |
385 |
Q |
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| T |
4122258 |
caagattgttttcattttgaatgccttctttgaaaacatggctgatttccatc |
4122310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 4119233 - 4119278
Alignment:
| Q |
383 |
atccaataatttcacagaagtgagtctattagcctttaaccataaa |
428 |
Q |
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| T |
4119233 |
atccaataatttcacagaagtgagtctattagcctttaaccataaa |
4119278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 4122005 - 4122064
Alignment:
| Q |
184 |
agaaatgcctttcttttatgagcactgatatccaaattgaatg-tcaaacatttttaaag |
242 |
Q |
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| T |
4122005 |
agaaatgcctttcttttatgagtactggtatccaaattgaatgttaaaacatttttaaag |
4122064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 4121896 - 4121964
Alignment:
| Q |
45 |
tataatatgttactgcagttcttctatcctgccacttatttacttaatgtgatactgatgtctcctaca |
113 |
Q |
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| T |
4121896 |
tataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctaca |
4121964 |
T |
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