View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_30 (Length: 409)
Name: NF19906_high_30
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 40719413 - 40719029
Alignment:
| Q |
16 |
atgaaagaatgtataatccgatggaatgaagtaacacttcacaaatagcatatttcgtttgattatataacttttaaaaaacgaacgatctgatcaagcc |
115 |
Q |
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| T |
40719413 |
atgaaagaatgtataatccaatggaatgaagtaacatttcacaaatagcatatttcgtttgattatacaacttttgaaaaacgaacgatctgatcaagcc |
40719314 |
T |
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| Q |
116 |
tcattaaaagcggatgtggaagtgagtttgaacggggaggacgtacttgagtgtgttcccgaaacatggtgtgtattgagcgcacgctaacgtatgtaga |
215 |
Q |
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| T |
40719313 |
tcattaaaagcggatgtgggagtgagtttgaacagggaggacgtacgtgagtgtgttcccgaaacatggtgtgtattgagcgcacgctaacgtatgtaga |
40719214 |
T |
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| Q |
216 |
---agcgtgacgtggaaagaaaccaaaattccaaaaaggaaaaatttaaggttttggtttcataaaatattgatacataattagaggtggcacttgttga |
312 |
Q |
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| T |
40719213 |
agcagcgtgacgtggaaagaaaccaaaattccaaaaaggaaaaatttaaggttttggtttcataaaatattgatacataattagaggtggcgtttgttga |
40719114 |
T |
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| Q |
313 |
ttgcgccatctcccacttacaaaacaagttacctcttcgggcacaccccaaatatcatatctccattgtatataagttagtattg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
40719113 |
ttgcgccatctcccacttacaaaacaagttacctcttcgggcacaccccaagtatcatatctccattgtatatacgttagtattg |
40719029 |
T |
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