View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_32 (Length: 394)
Name: NF19906_high_32
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 86 - 375
Target Start/End: Original strand, 1780674 - 1780952
Alignment:
| Q |
86 |
tggaagcaagaaatcatgtgggggtatgnnnnnnnn-tctcaaatttaacgggtccgtttaattaaaatgaactccaaacccaaaaattaaattggtagg |
184 |
Q |
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| T |
1780674 |
tggaagcaagaaatcacgtgggggtatgaaaaaaaaatctcaaatttaacgggtccgtttaattaaaaagaactccaaacccaaaaattaaattggtagg |
1780773 |
T |
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| Q |
185 |
tcggttaatatgatatttaagcatataagcattataattgattatttttcataatctcgaaaacaaaatcgtgaaaccaaaaaatcttcttcaccttcac |
284 |
Q |
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| T |
1780774 |
tcggttaatatgatatttaagcatataagcattataattgattatttttcataatctcgaaaacaaaatcgtgaaaccaaaaaatcttcttcac------ |
1780867 |
T |
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| Q |
285 |
gaaacacttcacatctagggttttagaatcgaaccttgaaccagaacaataaccatggcttccgatgatgaaatcgagaagacgcaagaag |
375 |
Q |
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| T |
1780868 |
------cttcatatctagggttttagaatcgaaccttgaaccagaacaataaccatggcttccgatgatgaaatcgagaagacgcaagaag |
1780952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 23497368 - 23497305
Alignment:
| Q |
244 |
aaaacaaaatcgtgaaaccaaaaaa-tcttcttcaccttcacgaaacacttcacatctagggtt |
306 |
Q |
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| T |
23497368 |
aaaacaaaatcgggaaaccaaaaaaatcttcttcaccttcacgaaacactccatatctagggtt |
23497305 |
T |
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