View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_37 (Length: 357)
Name: NF19906_high_37
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 11821767 - 11821430
Alignment:
| Q |
1 |
ctccacattgcctcatatatgacataaccagaaatgcatcccactctaagcatgaagactgaagtagttttaatgctccactttatgcaaacttcagaac |
100 |
Q |
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| T |
11821767 |
ctccacattgcctcatatatgagataaccagaaatgcatcccactctaagcatgaagactgaagtagttttaatgctccactttatgcaaactatggaac |
11821668 |
T |
|
| Q |
101 |
tatagcacaaaaacacaaccagctccaaggatatatattatcaacaagtaaggtacaacaaagccaaaacctagaataagaaaagctttgaaagaagatg |
200 |
Q |
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| T |
11821667 |
tatagcacaaaaacaccaccagctccaaggatatatattatcaacaagtaaggtacaacaaagccaaaacctagaataagaaaagctttgaaagaagatg |
11821568 |
T |
|
| Q |
201 |
ataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctagtttgcctatactttt |
300 |
Q |
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| T |
11821567 |
ataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctagtttgcctatactttt |
11821468 |
T |
|
| Q |
301 |
acttctcctcatttgctccattttacactcccatcact |
338 |
Q |
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| T |
11821467 |
acttctcctcatttgctccattttacactcccatcact |
11821430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 15273576 - 15273726
Alignment:
| Q |
186 |
ctttgaaagaagatgataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctag |
285 |
Q |
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| T |
15273576 |
ctttgaaagaagatggtaacaattacaaacacattcaaagaaaaactcaccaaaatatttgttccctcaattttctattcgctgttacttgtagctctat |
15273675 |
T |
|
| Q |
286 |
tttgcctatacttttacttctcctcatttgctccattttacactcccatca |
336 |
Q |
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| T |
15273676 |
tttgcctatacttttacttccactcatttgctccatttttcactcccatca |
15273726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 157 - 338
Target Start/End: Complemental strand, 44249874 - 44249692
Alignment:
| Q |
157 |
aacaaagccaaaacctagaataagaaaa-gctttgaaagaagatgataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctcca |
255 |
Q |
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||||||||||||| | |||||||||||| ||||||||| ||||||| |||| || ||| |||||||||||||| |||||||||||||||||||||| | |
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| T |
44249874 |
aacaaagccaaaaacgagaataagaaaacgctttgaaaaaagatgaccacaactacaaaaccattcaaagaaaaattcaccaaaacatttgtgccctcaa |
44249775 |
T |
|
| Q |
256 |
ttttctattctttgctacctttagctctagtttgcctatacttttacttctcctcatttgctccattttacactcccatcact |
338 |
Q |
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|||||||||| | |||||||| |||||| |||| ||||||||||||||| ||||||||||||| ||| |||| |||||||| |
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| T |
44249774 |
ttttctattcactactacctttcgctctaatttgtctatacttttacttccactcatttgctccaattttcacttccatcact |
44249692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 215 - 338
Target Start/End: Complemental strand, 44253425 - 44253302
Alignment:
| Q |
215 |
cacattcaaagaaaaactcaccaaaacatttgtgccctccattttctattctttgctacctttagctctagtttgcctatacttttacttctcctcattt |
314 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| || |||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||| |
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| T |
44253425 |
cacattcaaagaaaaactcaccaaaacatttttgcactcaatcttctattcactgctacctatagctctaatttgtctatacttttacttccactcattt |
44253326 |
T |
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| Q |
315 |
gctccattttacactcccatcact |
338 |
Q |
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|||||||||| ||||||||||||| |
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| T |
44253325 |
gctccatttttcactcccatcact |
44253302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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