View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_39 (Length: 351)
Name: NF19906_high_39
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 11241481 - 11241806
Alignment:
| Q |
16 |
caaccatgacattttgttttgtaaaacacaagcttcaaatgccaaaccacaactgcacaaggattatctagagatgagaattatccctgataatcttcgt |
115 |
Q |
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| T |
11241481 |
caaccatgacattttgttttctaaaacacaagcttcaaatgccaaaccacaactgcacaaggattatctagagatgagaattatccctgatagtcttcgt |
11241580 |
T |
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| Q |
116 |
tgtaacattgaagcttgtaaactg-aatccctaggtgaagaatactaattttagtttttccttgtctttagttatatcagtttcaactgatggtgctgct |
214 |
Q |
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| T |
11241581 |
tgtaacattgaagcttgtaaactggaatccctaggtgaagaatactaattttagttttgccttgtctttggttatatcagtttcagttgatagtgctgct |
11241680 |
T |
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| Q |
215 |
ctttgaaacaagcatagctttgataaagcatgcttctttgggatacaatcaagcttctaaacaatttatttgcaaaataaatcatgaaatggttgtactt |
314 |
Q |
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| T |
11241681 |
ctctgaaacaagcatagctttgataaagcatgcttctttgggatacaatcaagcttctaaacaatttatttgcaaaataaatcatgaaatggttgtactt |
11241780 |
T |
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| Q |
315 |
ttactcaagttttcttttgggatttt |
340 |
Q |
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| T |
11241781 |
ttactcaagttttcttttgggatttt |
11241806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 435996 - 435917
Alignment:
| Q |
257 |
atacaatcaagcttctaaacaatttatttgcaaaataaatcatgaaatggttgtacttttactcaagttttcttttggga |
336 |
Q |
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| T |
435996 |
atacaatcgagcttctaaacaatttatttgctaaatcagtcctgaaattgttgtacttttactcaagttttcatttggga |
435917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 436210 - 436098
Alignment:
| Q |
28 |
tttgttttgtaaaacacaagcttcaaatgccaaaccacaactgcacaaggattatctagagatgagaatt-atccctgataatcttcgttgtaacattga |
126 |
Q |
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| T |
436210 |
tttgttttctaaaacacaagattcaaaggccaaaccataactgcacaaggattagctagagatgataattcatcccttatcgtctacattgcaatcttga |
436111 |
T |
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| Q |
127 |
agcttgtaaactg |
139 |
Q |
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| T |
436110 |
agcttgtaaactg |
436098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 436086 - 436037
Alignment:
| Q |
206 |
ggtgctgctctttgaaacaagcatagctttgataaagcatgcttctttgg |
255 |
Q |
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| T |
436086 |
ggtgctgctcttcgaaacaagcacagccttgataaagcatgctgctttgg |
436037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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