View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_41 (Length: 334)
Name: NF19906_high_41
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 12322478 - 12322790
Alignment:
| Q |
1 |
ttcataaacaacaaaaccaattaagtgactagagagattcgtgagtgcacnnnnnnngtgttctgaggtgacaaaagtgtttgtgattataagctataac |
100 |
Q |
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| T |
12322478 |
ttcataaacaacaaaaccaattaagtgactagagagattcgtgagtgcactttttttgtgttctgaggtgacaaaagtgtttgtgattataagctataac |
12322577 |
T |
|
| Q |
101 |
acgtgacatgttattagtggttcattgttacgtatagtatggtcatagtttcaattcttaggcaatattttcacatgcagctataagaagattctgcaga |
200 |
Q |
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| T |
12322578 |
acgtgacatgttattagtggttcattgttacgtatagtatggtcatagtttcaattcttaggcaatattttcacatgcagctataagaagattctgcaga |
12322677 |
T |
|
| Q |
201 |
aatttcaagaactaagaaagaaagtcttcattttcagtttgtggtcacattactttatttttcatgagaggagatgaagagacacgtgttgatgagaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12322678 |
aatttcaagaactaagaaagaaagtcttcattttcagtttgtggtcacattactttatttttcatgagaggagatgaagagacacgtgttgatgagaata |
12322777 |
T |
|
| Q |
301 |
tttcacgggatgg |
313 |
Q |
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||||||||||||| |
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| T |
12322778 |
tttcacgggatgg |
12322790 |
T |
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