View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_high_44 (Length: 325)
Name: NF19906_high_44
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 37860032 - 37859842
Alignment:
| Q |
14 |
atatatattagacccacccatttcactcctcattcatctccattcctctcttctcaaccctctaattttctcccttatccttacaaacctaatcttcaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37860032 |
atatatattagacccacccatttcactcctcattcatctccattcctctcttctcaaccctctaattttctcccttatccttacaaacctaatcttcaat |
37859933 |
T |
|
| Q |
114 |
ttcatttcaaacaacaacnnnnnnnccaataaccaaaccatgccttttgcttaacactctccaaaatttgctctcacctcataacatcctca |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859932 |
ttcatttcaaacaacaac-aaaaaaccaataaccaaaccatgtctttggtttaacactctccaaaatttgctctcacctcataacatcctca |
37859842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 37859764 - 37859736
Alignment:
| Q |
283 |
ggataagacaaaatgtcttcttccttgtg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37859764 |
ggataagacaaaatgtcttcttccttgtg |
37859736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University