View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_47 (Length: 300)
Name: NF19906_high_47
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 35341630 - 35341357
Alignment:
| Q |
16 |
atgggatgtcaacttcctctaacatttcatttttatagacatccttcgtatgtaaatttatttttggaaaaaatctagtgtggctttagcc-------ac |
108 |
Q |
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| T |
35341630 |
atgggatgtcaacttcctctaacatttcatttttatagacatccttcgtatgtaaatttatttttggaaaaaatctagcgtggctttagcctaaagccac |
35341531 |
T |
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| Q |
109 |
accaaggtttatgatagatccacccgtgcctctaatgtcatctttactgagctctagggtctcgacctttgcttgaaactcgcaagaagcgtacctatac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35341530 |
accaaggtttatgatagatccacccgtgcctctaatgtcatctttactgagctctagggtcttgacctttgcttgaaactcgcaagaagcgtacctatac |
35341431 |
T |
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| Q |
209 |
atttccttcttgttgaagtaaattgttcggttgttgttagcctagtaaataaagggtatcagtcacgcccaatg |
282 |
Q |
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| T |
35341430 |
atttccttcttgttgaagtaaattgttcggttgttgttagcctagtaaataaagggtatcagtcacgcccaatg |
35341357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 5034808 - 5034870
Alignment:
| Q |
203 |
ctatacatttccttcttgttgaagtaaattgttcggttgttgttagcctagtaaataaagggta |
266 |
Q |
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| T |
5034808 |
ctattcatttccttcttgttgaagtagactcatcggttattgttagcctagtaaa-aaagggta |
5034870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 4374085 - 4374041
Alignment:
| Q |
28 |
cttcctctaacatttcatttttatagacatccttcgtatgtaaat |
72 |
Q |
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| T |
4374085 |
cttcttctaacatttcatttttatagacatccttcatatgtaaat |
4374041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 32103994 - 32104040
Alignment:
| Q |
26 |
aacttcctctaacatttcatttttatagacatccttcgtatgtaaat |
72 |
Q |
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|||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
32103994 |
aacttcttcaaacatttcatttttatagacatccttcatatgtaaat |
32104040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 7116544 - 7116497
Alignment:
| Q |
22 |
tgtcaacttcctctaacatttcatttttatagacatccttcgtatgta |
69 |
Q |
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||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
7116544 |
tgtcaacttcctctaacatttcatttttataaaaaagcttcgtatgta |
7116497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 24912212 - 24912260
Alignment:
| Q |
23 |
gtcaacttcctctaacatttcatttttatagacatccttcgtatgtaaa |
71 |
Q |
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||||| || |||||||| || ||||||||||||||||||| |||||||| |
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| T |
24912212 |
gtcaagtttctctaacactttatttttatagacatccttcatatgtaaa |
24912260 |
T |
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