View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19906_high_50 (Length: 295)

Name: NF19906_high_50
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19906_high_50
NF19906_high_50
[»] chr2 (4 HSPs)
chr2 (112-282)||(15019187-15019354)
chr2 (175-282)||(31968675-31968779)
chr2 (34-84)||(11229230-11229280)
chr2 (34-84)||(43725317-43725367)
[»] chr7 (4 HSPs)
chr7 (34-84)||(25887695-25887745)
chr7 (34-84)||(47193039-47193089)
chr7 (34-78)||(45607136-45607180)
chr7 (34-84)||(155890-155940)
[»] chr6 (2 HSPs)
chr6 (34-84)||(24752343-24752393)
chr6 (34-84)||(26378294-26378344)
[»] chr5 (5 HSPs)
chr5 (34-84)||(11767899-11767949)
chr5 (34-84)||(19127236-19127286)
chr5 (41-73)||(14323888-14323920)
chr5 (41-73)||(26660331-26660363)
chr5 (41-73)||(26931923-26931955)
[»] chr1 (3 HSPs)
chr1 (34-84)||(30631754-30631804)
chr1 (34-84)||(35846228-35846278)
chr1 (41-84)||(20288248-20288291)
[»] chr8 (1 HSPs)
chr8 (34-77)||(11223775-11223818)
[»] chr3 (2 HSPs)
chr3 (34-84)||(7294008-7294058)
chr3 (34-84)||(51672975-51673025)
[»] chr4 (2 HSPs)
chr4 (34-84)||(15596508-15596558)
chr4 (41-74)||(40409085-40409118)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 112 - 282
Target Start/End: Original strand, 15019187 - 15019354
Alignment:
Q  112 gagagatgcaactttgtctggataatcaaaattgttgggcgctaaagatttttcaccaacaagcttatctcctcattccacaccgcaaacactatgtcac 211  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019187 gagagttggaactttgtctggataatcaaaattgttgggcgctaaagatttttcaccaacaagcttatctcctcattccacaccgcaaacactatgtcac 15019286  T
Q  212 tatctggttatctccaacacaacaacaacactcacattgtactctcaaaatcacccatgtccaacatattg 282  Q
    ||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  15019287 tatctggttatctccaac---acaacaacactcacattgaactctcaaaatcacccatgtccaacaaattg 15019354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 31968675 - 31968779
Alignment:
Q  175 cttatctcctcattccacaccgcaaacactatgtcactatctggttatctccaacacaacaacaacactcacattgtactctcaaaatcacccatgtcca 274  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||   |||||||||||||||||| ||||||||||||| |||||||||    
T  31968675 cttatctcctcattccacgccgcaaacactatgtcactgtctggtcatctccaac---acaacaacactcacattgaactctcaaaatcaaccatgtcca 31968771  T
Q  275 acatattg 282  Q
    ||| ||||    
T  31968772 acaaattg 31968779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 11229280 - 11229230
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  11229280 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 11229230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 43725317 - 43725367
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  43725317 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 43725367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 25887695 - 25887745
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  25887695 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 25887745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 47193039 - 47193089
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||| |||||    
T  47193039 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttatctaaaatgg 47193089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 45607136 - 45607180
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtcta 78  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||    
T  45607136 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttatcta 45607180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 155940 - 155890
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| | ||||||||||||||||| ||||||||||||| |||||    
T  155940 accaatgaaaagtaagaaaaaagaagttgtatcaaaagttgtctaaaatgg 155890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 24752343 - 24752393
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  24752343 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 24752393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 26378344 - 26378294
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  26378344 accaatgaaaaatgagaaaaaagaagttgtatcaaaagttgtctaaaatgg 26378294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 11767949 - 11767899
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  11767949 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 11767899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 19127236 - 19127286
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||||||||||||||||||||||  |||||||||| || |||||    
T  19127236 accaatgaaaaatgagaaaaaagaagttgtcgcaaaagttgtttaaaatgg 19127286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 14323920 - 14323888
Alignment:
Q  41 aaaaatgagaaaaaagaagttgtaccaaaagtt 73  Q
    |||| ||||||||||||||||||||||||||||    
T  14323920 aaaagtgagaaaaaagaagttgtaccaaaagtt 14323888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 26660363 - 26660331
Alignment:
Q  41 aaaaatgagaaaaaagaagttgtaccaaaagtt 73  Q
    |||||||||||||||||| ||||||||||||||    
T  26660363 aaaaatgagaaaaaagaaattgtaccaaaagtt 26660331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 26931955 - 26931923
Alignment:
Q  41 aaaaatgagaaaaaagaagttgtaccaaaagtt 73  Q
    |||||||||||||||||| ||||||||||||||    
T  26931955 aaaaatgagaaaaaagaaattgtaccaaaagtt 26931923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 30631804 - 30631754
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  30631804 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 30631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 35846278 - 35846228
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  35846278 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatgg 35846228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 20288291 - 20288248
Alignment:
Q  41 aaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  20288291 aaaagtgagaaaaaagaagttgtatcaaaagttgtctaaaatgg 20288248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 11223818 - 11223775
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtct 77  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  11223818 accaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtct 11223775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 7294058 - 7294008
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||| |||||    
T  7294058 accaatgaaaaataagaaaaaagaagttgtatcaaaagttgtctaaaatgg 7294008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 51672975 - 51673025
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||| |||||    
T  51672975 accaatgaaaactgaaaaaaaagaagttgtaccaaaagttgtctaaaatgg 51673025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 15596508 - 15596558
Alignment:
Q  34 accaaggaaaaatgagaaaaaagaagttgtaccaaaagttgtctagaatgg 84  Q
    ||||| ||||||||||||||||||||||||  |||||||||| || |||||    
T  15596508 accaatgaaaaatgagaaaaaagaagttgtcacaaaagttgtttaaaatgg 15596558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 40409118 - 40409085
Alignment:
Q  41 aaaaatgagaaaaaagaagttgtaccaaaagttg 74  Q
    |||| |||||||||||||||||||||||||||||    
T  40409118 aaaagtgagaaaaaagaagttgtaccaaaagttg 40409085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University