View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_high_56 (Length: 272)
Name: NF19906_high_56
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_56 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 37500871 - 37500616
Alignment:
| Q |
1 |
taccaacaaatttgcatagtatatgctagaagtgaagtaagcacaaccttagcaagggcgattcttccaaactttttcaaaa-ccttcctttccaagaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
37500871 |
taccaacaaatttgcatagtatatgctggaagtgaagtaagcacaaccttagcaagggcgactcttccaaactttttcaaaagccttccattccaagaag |
37500772 |
T |
|
| Q |
100 |
caagcttagaggctactctatcatggatctttaggaaatcttctttctttgtatgtccatatctcatctttaatcccaaataattctccaagcggtcagt |
199 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37500771 |
caagcttagaggctactttatcatagatctttaggaaatcttctttctttgtacgtccatatctcatctttaatcccaaataattctctaagcggtcagt |
37500672 |
T |
|
| Q |
200 |
gaatgtaatattagcgagatgttcaagagaatatttgatgaattctactaactcctt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| |
|
|
| T |
37500671 |
gaatgtaatattagcgagatgttcaagaggttatttgatgga-tctgctaactcctt |
37500616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 9194669 - 9194775
Alignment:
| Q |
4 |
caacaaatttgcatagtatatgctagaagtgaagtaagcacaaccttagcaagggcgattcttccaaactttttcaaaaccttcctttccaagaagcaag |
103 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||| || | || || |||| |||| || |||||||||||||||||| | |
|
|
| T |
9194669 |
caacaaatttgaatagtttatgctggaagtgaagtacgcacaaccttagcaaggatgactatttcatacttattcagaagcttcctttccaagaagcatg |
9194768 |
T |
|
| Q |
104 |
cttagag |
110 |
Q |
| |
|
||||||| |
|
|
| T |
9194769 |
cttagag |
9194775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University