View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19906_high_60 (Length: 254)

Name: NF19906_high_60
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19906_high_60
NF19906_high_60
[»] chr6 (2 HSPs)
chr6 (47-239)||(5918530-5918722)
chr6 (165-239)||(5922217-5922291)
[»] chr5 (9 HSPs)
chr5 (1-195)||(20321811-20322005)
chr5 (1-168)||(15451047-15451214)
chr5 (114-168)||(36731139-36731193)
chr5 (6-86)||(9281595-9281675)
chr5 (197-233)||(20321758-20321794)
chr5 (197-233)||(20326472-20326508)
chr5 (3-83)||(30997676-30997756)
chr5 (115-168)||(23883276-23883329)
chr5 (92-164)||(18482408-18482480)
[»] chr3 (5 HSPs)
chr3 (1-178)||(10545527-10545704)
chr3 (45-168)||(12298798-12298921)
chr3 (44-127)||(5686772-5686855)
chr3 (70-127)||(5665331-5665388)
chr3 (197-238)||(10545477-10545518)
[»] chr1 (4 HSPs)
chr1 (4-199)||(32610461-32610670)
chr1 (45-168)||(52780078-52780201)
chr1 (114-168)||(37736604-37736658)
chr1 (114-168)||(9801604-9801658)
[»] chr4 (5 HSPs)
chr4 (36-168)||(22645751-22645883)
chr4 (30-164)||(10655126-10655260)
chr4 (30-164)||(10869271-10869405)
chr4 (96-164)||(14041274-14041342)
chr4 (96-164)||(19799186-19799254)
[»] chr8 (4 HSPs)
chr8 (36-167)||(15885162-15885293)
chr8 (31-164)||(15760712-15760845)
chr8 (31-164)||(19996548-19996681)
chr8 (114-168)||(18550377-18550431)
[»] scaffold0329 (1 HSPs)
scaffold0329 (45-168)||(13407-13530)
[»] chr7 (2 HSPs)
chr7 (33-163)||(8854621-8854751)
chr7 (96-164)||(1528607-1528675)
[»] chr2 (3 HSPs)
chr2 (114-168)||(23683081-23683135)
chr2 (102-163)||(19913978-19914039)
chr2 (105-161)||(13486828-13486884)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 5918722 - 5918530
Alignment:
Q  47 ttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918722 ttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaa 5918623  T
Q  147 cctccagcttgtggggggctatcggatgatacacataaggatgaaataacttgagtttagagtgttttagttacactatagtgtttcattact 239  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918622 cctccagcttgtggggggctattggatgatacacataaggatgaaataacttgagtttagagtgttttagttacactatagtgtttcattact 5918530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 5922291 - 5922217
Alignment:
Q  165 ctatcggatgatacacataaggatgaaataacttgagtttagagtgttttagttacactatagtgtttcattact 239  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5922291 ctattggatgatacacataaggatgaaataatttgagtttagagtgttttagttacactatagtgtttcattact 5922217  T

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Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 20322005 - 20321811
Alignment:
Q  1 tagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaacc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||| ||| ||||||||||||||||    
T  20322005 tagtgagagaaaagctacattctggcatactcaagcttcttcctgtttcttctaaagagcaggtggctgattttttcaccaaatctcttcatcctcaacc 20321906  T
Q  101 ctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctatcggatgatacacataaggatgaaataa 195  Q
     |||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  20321905 ttttaatcttcttctatccaagttgagcttgttagacatttaccaacctccagcttgtggggggctattggatgatacacataaggatgatataa 20321811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 15451047 - 15451214
Alignment:
Q  1 tagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaacc 100  Q
    |||||||||| || || ||| ||||||| ||||| ||||||||||| || ||||||||   | | || ||||||||||| ||| |||| |  ||||||||    
T  15451047 tagtgagagagaagcttcatgctggcattctcaaacttcttcctgtctcatctcaagattggttggcagatttcttcactaaacctctcctccctcaacc 15451146  T
Q  101 ctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    ||||  | |||| |||||||||||||||||| ||||||| || ||||| ||| |||||||||||||||    
T  15451147 ctttggtattctgttatccaagctgggcttgatagatatctatcaaccaccatcttgtggggggctat 15451214  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 36731193 - 36731139
Alignment:
Q  114 ttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    ||||||||| |||| ||| |||||||||||||||||||| |||||||| ||||||    
T  36731193 ttatccaagttgggattggtagatatttaccaacctccatcttgtgggaggctat 36731139  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 9281595 - 9281675
Alignment:
Q  6 agagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagct 86  Q
    |||||||| || || |||||||| ||||| || ||||| |||||||| ||||| || || |||||||| ||||||||||||    
T  9281595 agagaaaagctgcaatctggcatgctcaaactgcttccagtttcttcacaagaccaagtagctgattttttcacaaaagct 9281675  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 20321794 - 20321758
Alignment:
Q  197 ttgagtttagagtgttttagttacactatagtgtttc 233  Q
    ||||||||||||||||||||||| |||||||||||||    
T  20321794 ttgagtttagagtgttttagttatactatagtgtttc 20321758  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 20326508 - 20326472
Alignment:
Q  197 ttgagtttagagtgttttagttacactatagtgtttc 233  Q
    ||||||||||||||||||||||| |||||||||||||    
T  20326508 ttgagtttagagtgttttagttatactatagtgtttc 20326472  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 30997756 - 30997676
Alignment:
Q  3 gtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaa 83  Q
    |||||||||||||| ||   ||||||  | |||||| | ||||||||||||||||| ||  ||||||||||||||||||||    
T  30997756 gtgagagaaaaacttcaagttggcatcatgaagcttatccctgtttcttctcaagatcaaattgctgatttcttcacaaaa 30997676  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 23883329 - 23883276
Alignment:
Q  115 tatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    |||||||| |||| ||| ||||||| |||||||||||| |||||||| ||||||    
T  23883329 tatccaagttgggattggtagatatctaccaacctccaccttgtgggaggctat 23883276  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 18482480 - 18482408
Alignment:
Q  92 tcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtgggggg 164  Q
    ||||||||| || ||||| ||| |||||||| ||||  ||||| |||| ||||| |||||| |||||||||||    
T  18482480 tcctcaacctttcaatctacttctatccaagttggggatgttatatatctaccatcctccaacttgtgggggg 18482408  T

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Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 10545704 - 10545527
Alignment:
Q  1 tagtgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaacc 100  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||    
T  10545704 tagtgagggaaaagctacattctggcatactcaagcttcttcatgtttcttcttaagagcaggttgttgatttcttcaccaaagctcttcatcctcaacc 10545605  T
Q  101 ctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctatcggatgatac 178  Q
     || || ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||    
T  10545604 tttcaaccttcttttatctaagctgggcttgttagatatctatcaacctccagcttgtagggggctattggatgatac 10545527  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 12298798 - 12298921
Alignment:
Q  45 gtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttacc 144  Q
    ||||| |||||||| || || |||||||| || || |||||| | | |||| |||| || ||  |||||||||||||| |||| ||| || | |||||||    
T  12298798 gtttcctctcaagatcaagtagctgatttttttactaaagctttgcttcctaaaccattcaacattcttttatccaagatgggattgataaaaatttacc 12298897  T
Q  145 aacctccagcttgtggggggctat 168  Q
    |||||||| |||||||||||||||    
T  12298898 aacctccatcttgtggggggctat 12298921  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 5686855 - 5686772
Alignment:
Q  44 tgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctggg 127  Q
    |||| |||||||||| ||| | ||  ||||||||||||||||||||||||||||||| || ||||| || ||||| ||| ||||    
T  5686855 tgttacttctcaagatcagctggccaatttcttcacaaaagctcttcatcctcaacctttcaatctcctattatctaagttggg 5686772  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 5665388 - 5665331
Alignment:
Q  70 atttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctggg 127  Q
    ||||||||||||||||||||||||||||||| || ||||| || ||||| ||| ||||    
T  5665388 atttcttcacaaaagctcttcatcctcaacctttcaatctcctattatctaagttggg 5665331  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 10545518 - 10545477
Alignment:
Q  197 ttgagtttagagtgttttagttacactatagtgtttcattac 238  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  10545518 ttgagtttagagtgttttagttgtacaatagtgtttcattac 10545477  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 32610670 - 32610461
Alignment:
Q  4 tgagagaaaaactacattctggcatactcaagcttcttcctgtttcttctcaagaacagg------ttgctgatttcttcacaaaagctcttcatcctca 97  Q
    |||| ||||| ||||| |||||| ||||||| ||||||| |||||| |||||||| || |      ||| |||||||||||| |||||||||||||||||    
T  32610670 tgagggaaaagctacaatctggcgtactcaaacttcttcttgtttcctctcaagagcaagagcaagttgttgatttcttcaccaaagctcttcatcctca 32610571  T
Q  98 accctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagctt--------gtggggggctatcggatgatacacataaggatg 189  Q
    ||| || || ||||||||||||| | ||| |||||||||||| || ||||||||| |||        | |||||||||| |||| |||||||||||||||    
T  32610570 acctttcaaccttcttttatccacgttggacttgttagatatctatcaacctccaacttggggggggggggggggctattggataatacacataaggatg 32610471  T
Q  190 aaataacttg 199  Q
    ||||||||||    
T  32610470 aaataacttg 32610461  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 52780078 - 52780201
Alignment:
Q  45 gtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttacc 144  Q
    ||||| |||||||| || || |||||||| || || |||||| | | |||| |||| || ||  |||||||||||||| |||| ||| || | |||||||    
T  52780078 gtttcatctcaagatcaagtagctgatttttttactaaagctttgcttcctaaacctttcaacattcttttatccaagatgggattgataaacatttacc 52780177  T
Q  145 aacctccagcttgtggggggctat 168  Q
    |||||||| |||||||||||||||    
T  52780178 aacctccatcttgtggggggctat 52780201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 37736658 - 37736604
Alignment:
Q  114 ttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    ||||||||| |||| ||| |||||||||||||||||||| |||||||| ||||||    
T  37736658 ttatccaagttgggattggtagatatttaccaacctccatcttgtgggaggctat 37736604  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 9801658 - 9801604
Alignment:
Q  114 ttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    ||||||||| | || ||| |||||||||||||||||||| |||||||| ||||||    
T  9801658 ttatccaagttaggattggtagatatttaccaacctccaacttgtgggaggctat 9801604  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 22645751 - 22645883
Alignment:
Q  36 cttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttag 135  Q
    ||||| || |||||||||||||| ||  ||||||||||||||||||||||||||| |||  || | |||  ||| |||||||||||| |||||||| |||    
T  22645751 cttctcccagtttcttctcaagatcaaattgctgatttcttcacaaaagctcttcttcccaaaacattttctctgcttttatccaagttgggcttgatag 22645850  T
Q  136 atatttaccaacctccagcttgtggggggctat 168  Q
    | ||||| |||| |||| |||||||||||||||    
T  22645851 acatttatcaacgtccaacttgtggggggctat 22645883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 10655126 - 10655260
Alignment:
Q  30 ctcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggct 129  Q
    |||||| | |||||||||||||||||||| || || |||||||| || || || ||| | | |||| |  |||||||| ||||| |||||||| |||| |    
T  10655126 ctcaagttgcttcctgtttcttctcaagatcaagtagctgatttttttaccaaggctttgcttcctaagacctttaatattcttctatccaagttgggtt 10655225  T
Q  130 tgttagatatttaccaacctccagcttgtgggggg 164  Q
    || || | ||||| ||| ||||| |||||||||||    
T  10655226 tgataaacatttatcaatctccaccttgtgggggg 10655260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 10869271 - 10869405
Alignment:
Q  30 ctcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggct 129  Q
    |||||| | |||||||||||||||||||| || || |||||||| || || || ||| | | |||| |  |||||||| ||||| |||||||| |||| |    
T  10869271 ctcaagttgcttcctgtttcttctcaagatcaagtagctgatttttttaccaaggctttgcttcctaagacctttaatattcttctatccaagttgggtt 10869370  T
Q  130 tgttagatatttaccaacctccagcttgtgggggg 164  Q
    || || | ||||| ||| ||||| |||||||||||    
T  10869371 tgataaacatttatcaatctccaccttgtgggggg 10869405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 14041274 - 14041342
Alignment:
Q  96 caaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtgggggg 164  Q
    ||||| |||||||||||  | |||||| |||| |||||||| || |||||||||||| |||||||||||    
T  14041274 caaccttttaatcttctactttccaagttgggattgttagacatctaccaacctccatcttgtgggggg 14041342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 19799254 - 19799186
Alignment:
Q  96 caaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtgggggg 164  Q
    ||||| ||||||||  | ||||||||| |||| ||||||||||| |||||||||||| |||| ||||||    
T  19799254 caaccttttaatctcttgttatccaagttggggttgttagatatataccaacctccaacttgcgggggg 19799186  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 15885293 - 15885162
Alignment:
Q  36 cttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttag 135  Q
    ||||| |||||||||||| | || ||  |||||||||||||||| ||  |  | | |||||||||||| ||| |||||||||||||| | || |||||||    
T  15885293 cttctgcctgtttcttcttaggaccaacttgctgatttcttcactaagtcattgcttcctcaacccttcaatattcttttatccaagttagggttgttag 15885194  T
Q  136 atatttaccaacctccagcttgtggggggcta 167  Q
    || | |||||||||| | ||||||||||||||    
T  15885193 atttgtaccaacctctaacttgtggggggcta 15885162  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 15760712 - 15760845
Alignment:
Q  31 tcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggctt 130  Q
    |||| ||||| ||| |||||||| |||| || || || ||||| ||||||||| |  | | ||||||||| |||||||  ||| |||||||| ||||  |    
T  15760712 tcaaacttctccctatttcttctaaagatcaagtggcagattttttcacaaaatccttacttcctcaaccttttaatccgcttctatccaagttgggaat 15760811  T
Q  131 gttagatatttaccaacctccagcttgtgggggg 164  Q
    ||||||||| ||||| |||| | |||||||||||    
T  15760812 gttagatatctaccatcctcgaacttgtgggggg 15760845  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 19996548 - 19996681
Alignment:
Q  31 tcaagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggctt 130  Q
    |||| ||||||||| |||||||| |||| || || || ||||| || |||||| |  | | ||||||||| || ||| | ||| |||||||| ||||  |    
T  19996548 tcaaacttcttcctatttcttctaaagatcaagtagcagatttttttacaaaatcattgcttcctcaaccattcaatttacttctatccaagttggggat 19996647  T
Q  131 gttagatatttaccaacctccagcttgtgggggg 164  Q
    ||||||||| ||||| |||||| |||||||||||    
T  19996648 gttagatatataccaccctccaacttgtgggggg 19996681  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 18550431 - 18550377
Alignment:
Q  114 ttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    ||||||||| |||| ||| |||||||||||||||||||| ||||| || ||||||    
T  18550431 ttatccaagttgggattggtagatatttaccaacctccaacttgtaggaggctat 18550377  T

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Target: scaffold0329 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 13407 - 13530
Alignment:
Q  45 gtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgttagatatttacc 144  Q
    ||||| |||||||| || || |||||||| || || |||||| | | |||| |||| || ||  |||||||||||||| |||| ||| || | |||||||    
T  13407 gtttcatctcaagatcaagtagctgatttttttactaaagctttgcttcctaaaccattcaacattcttttatccaagatgggattgataaacatttacc 13506  T
Q  145 aacctccagcttgtggggggctat 168  Q
    |||||||| |||||||||||||||    
T  13507 aacctccatcttgtggggggctat 13530  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 8854621 - 8854751
Alignment:
Q  33 aagcttcttcctgtttcttctcaagaacaggttgctgatttcttcacaaaagctcttcatcctcaaccctttaatcttcttttatccaagctgggcttgt 132  Q
    |||||||||||||| |||||    || ||| |||| || ||||| || ||| |||||| |||||||||||| ||  ||||||||| |||||| |   |||    
T  8854621 aagcttcttcctgtctcttcctctgaccagcttgcagacttctttactaaacctcttcttcctcaacccttcaacattcttttattcaagctcgaaatgt 8854720  T
Q  133 tagatatttaccaacctccagcttgtggggg 163  Q
    |||||||||||||   |||||||||||||||    
T  8854721 tagatatttaccattttccagcttgtggggg 8854751  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 1528675 - 1528607
Alignment:
Q  96 caaccctttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtgggggg 164  Q
    ||||| ||||||||| |  |||||||  |||| ||||| ||||| |||||||||||| |||||||||||    
T  1528675 caaccttttaatcttttgctatccaatttgggattgttggatatataccaacctccaccttgtgggggg 1528607  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 23683081 - 23683135
Alignment:
Q  114 ttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctat 168  Q
    ||||||||| |||| ||| |||||||||||||||||||| |||||||| ||||||    
T  23683081 ttatccaagttgggattggtagatatttaccaacctccatcttgtgggaggctat 23683135  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 19914039 - 19913978
Alignment:
Q  102 tttaatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtggggg 163  Q
    ||||||||| | ||||||||| |||| ||||| ||||| |||||||||||| ||||||||||    
T  19914039 tttaatcttttgttatccaagttggggttgttggatatataccaacctccaacttgtggggg 19913978  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 13486884 - 13486828
Alignment:
Q  105 aatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtggg 161  Q
    ||||||||| |||||||| ||||  |||| ||||| |||||||||||| ||||||||    
T  13486884 aatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtggg 13486828  T

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