View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_high_61 (Length: 252)
Name: NF19906_high_61
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_61 |
 | |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0603 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 239
Target Start/End: Original strand, 6138 - 6340
Alignment:
| Q |
38 |
gtacaattaaaacccacgaaagtgtttttgtcatctttgtcaagagtgaaacgtcaagctctgtgctacagaaattgtccgcaaactcattaaaaacaag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || | |||||||||| |||||| ||| ||||||| |
|
|
| T |
6138 |
gtacaattaaaacccacgaaagtgtttttatcatctttgtcaagagtgaaacgtcaagctttgtccttcggaaattgtccacaaactttttagaaacaag |
6237 |
T |
|
| Q |
138 |
cttgtatagcaaccccataacaacaacaattcttaaatgcattatttgcttt-gtttgtaagaagaataacaagaacagaatgcaagtctatggataata |
236 |
Q |
| |
|
||||| || |||| || |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||||| | |
|
|
| T |
6238 |
cttgtctaacaacaccttaacaacaacaattctcaaatgcattatttgctttagtttgtaagaagaataacaagatcaaaatgcaagtttatggataaca |
6337 |
T |
|
| Q |
237 |
aaa |
239 |
Q |
| |
|
||| |
|
|
| T |
6338 |
aaa |
6340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 4184323 - 4184147
Alignment:
| Q |
67 |
gtcatctttgtcaagagtgaaacgtcaagctctgtgctacagaaattgtccgcaaactcattaaaaacaagcttgtatagcaaccccataacaacaacaa |
166 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| | ||||||||| ||||||| || || ||| |||| || ||| | |||||| | ||| |
|
|
| T |
4184323 |
gtcatctctgtcaagagtgaaacgtcaagctttgtgcttcggaaattgtcaacaaactctctagaagaaagtttgtctaacaatgctttaacaagatcaa |
4184224 |
T |
|
| Q |
167 |
ttcttaaatgcattatttgctttgtttgtaagaagaataacaagaacagaatgcaagtctatggataataaaagtct |
243 |
Q |
| |
|
|||| |||| ||| | |||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
4184223 |
ttctaaaatccatcagttgcttagtttgtaagaagaataacaagaacaaaatgcaagtttatggataacaaaagtct |
4184147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 2918885 - 2918817
Alignment:
| Q |
29 |
catcattcagtacaattaaaacccacgaaagtgtttttgtcatctttgtcaagagtgaaacgtcaagct |
97 |
Q |
| |
|
||||||| |||| ||||| ||||| | |||||||| | |||| ||| ||||||||||||||||||||| |
|
|
| T |
2918885 |
catcattaagtagaattagaaccctcaaaagtgttgtcttcatatttatcaagagtgaaacgtcaagct |
2918817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 19287328 - 19287247
Alignment:
| Q |
60 |
tgtttttgtcatctttgtcaagagtgaaacgtcaagctctgtgctacagaaattgtccgcaaactcattaaaaacaagcttg |
141 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || |||||| |||||| ||| | ||||||||||| ||||||||||| |
|
|
| T |
19287328 |
tgttttcgtcatctttgtcaagagtgaaacgtcaaactttgtgcttcagaaaatgttcacaaactcattagaaacaagcttg |
19287247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University