View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_63 (Length: 251)
Name: NF19906_high_63
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_63 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 48441730 - 48441845
Alignment:
| Q |
136 |
agcttatatgtctaattcatcaagagacaattctttcaattcaagaagtcgatcactaccaccatcatcaaacaaatcatgcacatccccaccaatatcc |
235 |
Q |
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| T |
48441730 |
agcttatatgtctaattcatcaagagacaattctttcaattcaagaagtcgatcactaccaccatcatcaaacaaatcatgcacatccccaccaatatcc |
48441829 |
T |
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| Q |
236 |
tatgatcatgcatgtc |
251 |
Q |
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| T |
48441830 |
tatgatcatgcatgtc |
48441845 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 2403269 - 2403369
Alignment:
| Q |
86 |
tactagttgtatcatcttcatttccctgttctcatcatccggaaaagcatagcttatatgtctaattcatcaagagacaattctttcaattcaagaagtc |
185 |
Q |
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| T |
2403269 |
tactaattgtattattttcatctctctattctcatcatccaaaaaagtatagcttctatgtctaattcaccaacagacaactcttccaattcaagaagtc |
2403368 |
T |
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| Q |
186 |
g |
186 |
Q |
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| T |
2403369 |
g |
2403369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 34126651 - 34126703
Alignment:
| Q |
151 |
ttcatcaagagacaattctttcaattcaagaagtcgatcactaccaccatcat |
203 |
Q |
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| T |
34126651 |
ttcaccaagagacaaatctttcaattcaagaagtctctcaccaccatcatcat |
34126703 |
T |
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