View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_69 (Length: 249)
Name: NF19906_high_69
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 40454364 - 40454242
Alignment:
| Q |
1 |
tttgctgtatctataattcacacaaaaagttgctacgctcgaagtttaaagtgtggtcggaatacaattaaaagtttaaagtgtacatgtttcttataag |
100 |
Q |
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| T |
40454364 |
tttgttgtatctataattcacacaaaaaattgctatgctcgaagtttaaagtgtggttggaatacaattaaaagtttaaattgtgtatgtttcttataag |
40454265 |
T |
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| Q |
101 |
cgaagaaatcagaattataacat |
123 |
Q |
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| T |
40454264 |
cgaagaaatcagaattataacat |
40454242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 40454028 - 40453942
Alignment:
| Q |
155 |
taatttgtattatattaattcacatgtaaatgtattgaattttttagtnnnnnnnntacattgaactttattttgttatagtattat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
40454028 |
taatttgtattatattaattcacatgtaaatgtattgaattttttagtaaaaaaaatacattgaactttattttgttacagtattat |
40453942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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