View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_7 (Length: 577)
Name: NF19906_high_7
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 6993342 - 6992766
Alignment:
| Q |
1 |
attggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtct |
100 |
Q |
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| T |
6993342 |
attggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtct |
6993243 |
T |
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| Q |
101 |
tgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttcag |
200 |
Q |
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| T |
6993242 |
tgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttcag |
6993143 |
T |
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| Q |
201 |
gtttggggttgttatctaatctttctattctcgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaag |
300 |
Q |
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| T |
6993142 |
gtttggggttgttatctaatctttctattcttgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaag |
6993043 |
T |
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| Q |
301 |
gcttgatctttctaataattatttatctggctctattccacctgaactaggtaccctttcaaatcttcaaaatttgaacctttctaacaattctttcact |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993042 |
gcttgatctttcaaataattatttatctggctctattccacctgaactaggtaccctttcaaatcttcaaaatttgaacctttctaacaattctttcact |
6992943 |
T |
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| Q |
401 |
tcttcgcttccctctcagctaggtaatctttcaaagttggttgagctcgatcttagtatgaattctctttctgggccgttgccgggtagtttgttgtcaa |
500 |
Q |
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| T |
6992942 |
tcttcgcttccctctcagctaggtaatctttcaaagttggttgaactcgatcttagtatgaattctctttctgggccgttgccgggtagtttgttgtcaa |
6992843 |
T |
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| Q |
501 |
tgcctaagttgctaatatttgatgtatcagacaacagtctcactgatccactaccaaaattgtctggtttaaatgtt |
577 |
Q |
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| T |
6992842 |
tgcctaagttgctaatatttgatgtatcagaaaacagtctcactgatccactaccaaaattgtctggtttaaatgtt |
6992766 |
T |
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