View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_70 (Length: 249)
Name: NF19906_high_70
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 27944481 - 27944328
Alignment:
| Q |
67 |
cgtagtatggtatgttatgatatgttaagttgggtgctgagtgagactttatacagtggttacgattactgaaaaaaggggataataatgaa----tgat |
162 |
Q |
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| T |
27944481 |
cgtagtatggtatgttatgatatgttaagttgggtgctgagtgagtctttatatagtggttacgattactgaaaaaaggggataataatgaatgagtgat |
27944382 |
T |
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| Q |
163 |
aacaaatagatgcatgacatgtggaattagttgacggttaaagggaaactgata |
216 |
Q |
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| T |
27944381 |
aacaaatagatgcatgacacgtggaattagttgacggttaaagggaaactgata |
27944328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 27436035 - 27435881
Alignment:
| Q |
4 |
acagagaacagcatgaaagtttggttacgatgattcatgacttcttcttctgacttgatcgtac--gtagtatggtatgttatgatatgttaagttgggt |
101 |
Q |
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| T |
27436035 |
acagagaacagcatgaaagtttggttacgatgattcatgacttcttcttctgacttgaacttgatggtagtatggtatgttatgatatgttaagttgggt |
27435936 |
T |
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| Q |
102 |
gctgagtgagactttatacagtggttacgattactgaa-aaaaggggataataat |
155 |
Q |
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| T |
27435935 |
gctgagtgagtctttatatagtggttacgattactgaaaaaaaggggattataat |
27435881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 27550501 - 27550579
Alignment:
| Q |
113 |
ctttatacagtggttacgattactgaaaaaaggggataataatgaatgataacaaatagatgcatgacatgtggaattagtt |
194 |
Q |
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| T |
27550501 |
ctttatatagtggttacgattac---aataaagggataataatgagtgataacaaatagatgcaggacacgtggaattagtt |
27550579 |
T |
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