View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_high_86 (Length: 227)
Name: NF19906_high_86
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_86 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 23802670 - 23802890
Alignment:
| Q |
7 |
acaggctactaagcgtgtgtttggtttaacagttaccagaattgattttgtgtctataggaaattaggaatagaattaaatttttgtaatgttgaaaagt |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23802670 |
acaggctactaagcgtgtgtttgatttaacagttaccagaattgattttgtgtctataggaaattaggaatataattaaatttttgtaatgttgaaaagt |
23802769 |
T |
|
| Q |
107 |
ttacactaagtttcatactaaacttgttttcaaagtacaaacatctaagtataaagcatatcatttcgaattcagttttaaccaaaatcaattccattca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23802770 |
ttacactaagtttcatactaaacttgttttcaaagtacaaacatctaagtataaagcatttcatttcgaattcagttttaaccaaaatcaattccattca |
23802869 |
T |
|
| Q |
207 |
aaatcaagtttagcaaatgaa |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23802870 |
aaatcaagtttagcaaatgaa |
23802890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University