View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_87 (Length: 223)
Name: NF19906_high_87
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 5154428 - 5154369
Alignment:
| Q |
139 |
acttcctagtatcaatcaatatctgaaactatcttaaagaccgaattggtcaataaaaaa |
198 |
Q |
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| T |
5154428 |
acttcctagtatcaatcaatatctgaaactatcttaaagaccgaattggtcaataaaaaa |
5154369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 5154549 - 5154493
Alignment:
| Q |
18 |
atgaagggaaaatacagtgagccatatgaaatagaaaaacaaaccactcaatttgtc |
74 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5154549 |
atgaagggaaaatacagtgagccatgtgaaatagaaaaacaaaccactcaatttgtc |
5154493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 5180380 - 5180323
Alignment:
| Q |
141 |
ttcctagtatcaatcaatatctgaaactatcttaaagaccgaattggtcaataaaaaa |
198 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5180380 |
ttccttgtatcaatcaatatctgagactatcttaaagaccgaattggtcaataaaaaa |
5180323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 5180506 - 5180451
Alignment:
| Q |
18 |
atgaagggaaaatacagtgagccatatgaaatagaaaaacaaaccactcaatttgt |
73 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
5180506 |
atgaagggaaaatacagttagccatgtgaaatagaaaaacaaaccactcaatttgt |
5180451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 4844536 - 4844592
Alignment:
| Q |
18 |
atgaagggaaaatacagtgagccatatgaaatagaaaaacaaaccactcaatttgtc |
74 |
Q |
| |
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||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
4844536 |
atgaaggaaaaatacagtgaaccatgtgaaatagaaaaacaaaccactcaatttgtc |
4844592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 5170899 - 5170847
Alignment:
| Q |
145 |
tagtatcaatcaatatctgaaactatcttaaagaccgaattggtcaataaaaaa |
198 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
5170899 |
tagtatcaatcaatatctgagactatcttaaagaccgaattgg-caataaaaaa |
5170847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 5171047 - 5170999
Alignment:
| Q |
26 |
aaaatacagtgagccatatgaaatagaaaaacaaaccactcaatttgtc |
74 |
Q |
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|||| |||| ||| ||| |||||||||||||||||||||||| |||||| |
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| T |
5171047 |
aaaaaacagcgagtcatgtgaaatagaaaaacaaaccactcagtttgtc |
5170999 |
T |
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