View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_high_92 (Length: 202)
Name: NF19906_high_92
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_high_92 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 15205357 - 15205531
Alignment:
| Q |
15 |
gagagggggttggtaacagtgtcggtagttggtttgaggataatatacggaggatggtgggtgatgaaagtgacattttattctggtttgacacttgggt |
114 |
Q |
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| T |
15205357 |
gagagggggttggtaacggtgtcggtagttggtttgaggataatatacggaggatggtgggtgatggaagtaacactttattctggtttgacacttgggt |
15205456 |
T |
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| Q |
115 |
gggaaaattacctttgagattgaaatttcccgccttttttatttggatgtgcataaagagaggacggaggaggag |
189 |
Q |
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| T |
15205457 |
ggggtaattacctttgagattgaaattttccgcctttttgatttggctgtgcataaagagaggacggtggaggag |
15205531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 15244379 - 15244553
Alignment:
| Q |
15 |
gagagggggttggtaacagtgtcggtagttggtttgaggataatatacggaggatggtgggtgatgaaagtgacattttattctggtttgacacttgggt |
114 |
Q |
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| T |
15244379 |
gagagggggttggtaacggtgtcggtagttggtttgaggataatatacgaaggatggtgggtgatggaagtaacactttattctggtttgacacttgggt |
15244478 |
T |
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| Q |
115 |
gggaaaattacctttgagattgaaatttcccgccttttttatttggatgtgcataaagagaggacggaggaggag |
189 |
Q |
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| T |
15244479 |
gggggaattacctttgagattgaaattttccgcctttttaatttggttgtgcataaagagaggacggtggaggag |
15244553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 9825434 - 9825592
Alignment:
| Q |
17 |
gagggggttggtaacagtgtcggtagttggtttgaggataatatacggaggatggtgggtgatgaaagtgacattttattctggtttgacacttgggtgg |
116 |
Q |
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| T |
9825434 |
gagggggttggtaacggtgtcggtagttggtttgaggaaaatatacggcggatagtgggtgatggaagggaaactttattctggtatgacacttgggtgg |
9825533 |
T |
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| Q |
117 |
gaaaattacctttgagattgaaattt-cccgccttttttatttggatgtgcataaagag |
174 |
Q |
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| T |
9825534 |
gggaattaccattacgattgaaatttatccgcctttttgatttggctgtgaataaagag |
9825592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 22158593 - 22158436
Alignment:
| Q |
17 |
gagggggttggtaacagtgtcggtagttggtttgaggataatatacggaggatggtgggtgatgaaagtgacattttattctggtttgacacttgggtgg |
116 |
Q |
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||||||||||||||| ||| |||||||||||||||||| |||||||| | || |||| | ||| ||| | | ||||||||||| |||||||||||||| |
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| T |
22158593 |
gagggggttggtaacggtgccggtagttggtttgaggaaaatatacgacgaatagtggataatggaaggaaaactttattctggtatgacacttgggtgg |
22158494 |
T |
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| Q |
117 |
gaaaattacctttgagattgaaa-tttcccgccttttttatttggatgtgcataaaga |
173 |
Q |
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| T |
22158493 |
gggaattaccactacgattgaaattttcccgcctttttgatttggctgtgaataaaga |
22158436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 21606088 - 21605931
Alignment:
| Q |
18 |
agggggttggtaacagtgtcggtagttggtttgaggataatatacggaggatggtgggtgatgaaagtgacattttattctggtttgacacttgggtggg |
117 |
Q |
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|||||| |||| | ||||| || | |||||||||| ||||||| |||||| ||||||||| | ||| |||| |||||||||| ||| ||||||||||| |
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| T |
21606088 |
agggggatggtgatagtgtaggcatttggtttgagaataatatctggaggacggtgggtgacggaagggacacattattctggtatgatacttgggtggg |
21605989 |
T |
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| Q |
118 |
aaaattacctttgagattgaaattt-cccgccttttttatttggatgtgcataaagag |
174 |
Q |
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||||||| || |||||| ||||| ||| ||| ||| ||||||||||| |||||||| |
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| T |
21605988 |
ggaattaccattaagattgtaatttcccctcctgtttgatttggatgtgaataaagag |
21605931 |
T |
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