View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_1 (Length: 967)
Name: NF19906_low_1
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Complemental strand, 30369756 - 30369194
Alignment:
| Q |
11 |
actgaaatgaatatattgataaatgattaatgaatctcatttaagacgtttattgaggtgctggtcggagggataaatgtttgtgagatattactaataa |
110 |
Q |
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| T |
30369756 |
actgaaatgaatatattgataaatgattaatgaatctcatttaagaggtttattgaggtgctggtcggagggataagcgtctgtgagatattactaataa |
30369657 |
T |
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| Q |
111 |
ataggaaatactaacgagttgcattataaactatgaaaatatttgatttaatcatgctgttgaatcaaatcaatgatccaattgtttgatctgtaaatta |
210 |
Q |
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| T |
30369656 |
atagaaaatgctaacgagttgcattataaactatgaaaatatttgatttaatcatgttgttcaattaa-----tgatccaattgtttgatatgtaaatca |
30369562 |
T |
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| Q |
211 |
aagatccaacaagaccaaaccaattttt-aaaacattgattattatgaataaaataccatgagtttgctttcaagaaagaaa-taataaaaaacaatgcg |
308 |
Q |
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| T |
30369561 |
aagatccaacaagaccaaaccaattttttaaaaaattgattattatgaataaaataccatgagtttgcttgcaagaaaaaaaataataaaaaacaatgcg |
30369462 |
T |
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| Q |
309 |
ttatagactatgaaaatgacactaatttgcttttaagatatttaagatatattgatgaaaaatcc-aacaaacggagaatttcataaactataataagtg |
407 |
Q |
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| T |
30369461 |
ttatagactatgaaaatgacactaatttgcttttaagatat---------attgatgaaaaatcccaacaaaaggagaatttcataaactaca----gtg |
30369375 |
T |
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| Q |
408 |
gttcatgcaatttccattatc-------tatcttgaaggcatcttgacgattataaactctaccgtactagatttttgtgacaatgtgggactatttgta |
500 |
Q |
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| T |
30369374 |
gttcatgcaatttccattgtcatgaatgtatcttgaaggcatcttgacgattataaactcaaccgtactagatttttgtgacaatgtgggactatttgta |
30369275 |
T |
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| Q |
501 |
ggacccctttcttgcttttctaagcttcagaagtagatgcataaaaaatgattcttcaagtttatgccaattttatagaac |
581 |
Q |
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| T |
30369274 |
ggacccctttcttgcttttctaagcttcagaagtagatgcataaaaaatgattcttcaagtttatgccaatttcatagaac |
30369194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 621 - 698
Target Start/End: Complemental strand, 30369200 - 30369123
Alignment:
| Q |
621 |
ataggacaaggtttgaatgtttaaattcaattggtcctctctgaaagtttttgtcttaactccttagattggtttaga |
698 |
Q |
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| T |
30369200 |
atagaacaaggtttgaatgtttaaattcaattggtcctctctgaaagtttttgtcttaactccttagattggtttaga |
30369123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 30365720 - 30365672
Alignment:
| Q |
231 |
caatttttaaaacattgattattatgaataaaataccatgagtttgctt |
279 |
Q |
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| T |
30365720 |
caatttttaaaacattgattattaggaatgaaacaccatgagtttgctt |
30365672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 593 - 686
Target Start/End: Complemental strand, 31386096 - 31386007
Alignment:
| Q |
593 |
aagtattttaaactgaataatcaatcatataggacaaggtttgaatgtttaaattcaattggtcctctctgaaagtttttgtcttaactcctta |
686 |
Q |
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| T |
31386096 |
aagtatcttaaactgaataatca----tataggacaagatttgaatgtttgaattcaattggttatccctgaaagtttatctcttaacttctta |
31386007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 30607495 - 30607454
Alignment:
| Q |
235 |
ttttaaaacattgattattatgaataaaataccatgagtttg |
276 |
Q |
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| T |
30607495 |
ttttaaaacattgattattataaattaaataccatgagtttg |
30607454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 616 - 696
Target Start/End: Complemental strand, 20997979 - 20997899
Alignment:
| Q |
616 |
atcatataggacaaggtttgaatgtttaaattcaattggtcctctctgaaagtttttgtcttaactccttagattggttta |
696 |
Q |
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| T |
20997979 |
atcatataggacaaggtttgaatggtagaattcaattggtcatccctaaaagttcatctcttaacaccttacattagttta |
20997899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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