View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_12 (Length: 521)
Name: NF19906_low_12
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 10121183 - 10121708
Alignment:
| Q |
1 |
cataaccatt-atcacactgttcacacaggagtctggccagaatccccaagttttagagacacggacatgcaaccagtgccacgtggatggaaaggccat |
99 |
Q |
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|||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
10121183 |
cataaccatttatcacactattcatacaggaatctggccagaatccccaagttttagagacactgacatgccaccagtgccacgtggatggaaaggccat |
10121282 |
T |
|
| Q |
100 |
agtcaaataggagaagcattcaatgcttcatcttgcaacaggtttttgattgaatcacatgctcatcatctt-------------gacttcatatgcatt |
186 |
Q |
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| T |
10121283 |
tgtcaaataggagaagcattcaatgcttcatcttgcaacaggtttttgattgaatcacatgctcatcatctttttaattatttttgacttcatatgcatt |
10121382 |
T |
|
| Q |
187 |
attaggttcaagttggaccgtcttcattggttaatcattgatagtatattataggaaagtgataggagcaagatactatatgagtggatatgaagcagaa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10121383 |
attaggttcaagttggaccgtcttcattggttaatcattgatagtatattataggaaagtgataggagcaagatactatatgagtggatatgaaacagaa |
10121482 |
T |
|
| Q |
287 |
gaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctggtcatgggagccatacagcttccacagcagcaggacgatacgtctcaaaca |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121483 |
gaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctggtcatgggagccatacagcttccacagcagcaggacgatacgtctcaaaca |
10121582 |
T |
|
| Q |
387 |
tgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatggctaggatttctgtttacaaaacttgttgggattcaggttgctatgatgt |
486 |
Q |
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| T |
10121583 |
tgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatggctaggatttctgtttacaaaacttgttgggattcaggttgctatgatgt |
10121682 |
T |
|
| Q |
487 |
ggacttgttagctgcctttgatgatg |
512 |
Q |
| |
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| T |
10121683 |
ggacttgttagctgcctttgatgatg |
10121708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 237 - 512
Target Start/End: Complemental strand, 30628644 - 30628369
Alignment:
| Q |
237 |
ataggaaagtgataggagcaagatactatatgagtggatatgaagcagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctgg |
336 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| | |||| |||| |||||||| || || |||||| | || |
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| T |
30628644 |
ataggaaagtgataggagcaagatactataagagtggatatgaagcagaggaagagtcaaatgcaaaaatctcattcagatcagctagggacagcacagg |
30628545 |
T |
|
| Q |
337 |
tcatgggagccatacagcttccacagcagcaggacgatacgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatg |
436 |
Q |
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| T |
30628544 |
tcatggtagccatacagcttcaatagctgcagggagatatgtacaaaacatgaattataaaggactagcaagtggaggtgcaaggggaggtgcacctatg |
30628445 |
T |
|
| Q |
437 |
gctaggatttctgtttacaaaacttgttgggattcaggttgctatgatgtggacttgttagctgcctttgatgatg |
512 |
Q |
| |
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| T |
30628444 |
gctagaattgctgtgtacaaaacatgttgggattcaggttgctatgatgtggacttgctagctgcatttgatgatg |
30628369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 30629005 - 30628895
Alignment:
| Q |
34 |
tggccagaatccccaagttttagagacacggacatgcaaccagtgccacgtggatggaaaggccatagtcaaataggagaagcattcaatgcttcatctt |
133 |
Q |
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||||||||||| |||||||| || ||||| ||||||| ||||||||| || |||||||| ||| ||||| |||||||||||||||||| ||| ||| |
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| T |
30629005 |
tggccagaatctccaagtttcagtgacaccgacatgcctgcagtgccacaagggtggaaaggtcattgtcaatcaggagaagcattcaatgcctcaactt |
30628906 |
T |
|
| Q |
134 |
gcaacaggttt |
144 |
Q |
| |
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||||||||||| |
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| T |
30628905 |
gcaacaggttt |
30628895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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