View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_15 (Length: 505)
Name: NF19906_low_15
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Complemental strand, 42104210 - 42103739
Alignment:
| Q |
14 |
gcagagaagcaaaagccaaggcagtctcaggcacaagaaaattactcttatatacatgcaaacaacatagtttctttggaaaacatgtatgtgagtggaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42104210 |
gcagagaagcaaaagccaaggcagtctcaggcacaagaaaattactcttatatacatgcaaacaacatagtttctttggaaaacatgtatgttagtggaa |
42104111 |
T |
|
| Q |
114 |
ggccattgcactaccctcctatcatgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagca |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42104110 |
ggccattgcactaccctcctgacatgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagca |
42104011 |
T |
|
| Q |
214 |
tctgcagcctggcctagccgtgaacattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatc |
313 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42104010 |
tctgcagtccggcctagccgtgaacattgatccaatta---ggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatc |
42103914 |
T |
|
| Q |
314 |
acaggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattttggagttc |
413 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42103913 |
actggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaatcactaacatgtcatttgattttggagttc |
42103814 |
T |
|
| Q |
414 |
ttgacaatccaccatcaccgccattccttttagatgatttcatgggtatgggcgacgatgaaatgatacagtact |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42103813 |
ttgacaatccaccatcaccgccattccttttagatgatttcatgggtatgggtgacgatgaaatgatacagtact |
42103739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 137 - 488
Target Start/End: Complemental strand, 42113277 - 42112929
Alignment:
| Q |
137 |
atgcctcatgaaactgcttataatcttgaccttacagtcgcggaatatggtcctcgtcaggaagggcagcatcagcatctgcagcctggcctagccgtga |
236 |
Q |
| |
|
|||||||||||| ||||||||||||| || | ||||| | | |||||||||| ||| ||| ||||| ||||| || ||||||||||| | |||| | |
|
|
| T |
42113277 |
atgcctcatgaagctgcttataatctgtacaattcagtcacaggatatggtcctagtcgggatgggcaacatcaacaactgcagcctggtcccgccgcaa |
42113178 |
T |
|
| Q |
237 |
acattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatcacaggaggagacataaattattt |
336 |
Q |
| |
|
||| ||| ||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||| ||||| | ||||||| ||| |||||| | |
|
|
| T |
42113177 |
acagtgaacca---attaggcaaccagagaatgctgcaataactatgcctgcagcaaatgtgaatggtgatgaaattatcggaggaggcatgaattatat |
42113081 |
T |
|
| Q |
337 |
cgctaaagacgcattccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattttggagttcttgacaatccaccatcaccgcca |
436 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113080 |
tgctaaagacacattcccaaacgagctggataggtttggatcaccgttgagtaacatgtcatttgattttggagttcttgacaatccaccatcaccgcca |
42112981 |
T |
|
| Q |
437 |
ttccttttagatgatttcatgggtatgggcgacgatgaaatgatacagtact |
488 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
42112980 |
ttccttttagatgatttcatgggtttgggtgacgatgaaatgatgcagtact |
42112929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University