View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_17 (Length: 479)
Name: NF19906_low_17
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Original strand, 41658204 - 41658652
Alignment:
| Q |
13 |
aatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41658204 |
aatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggtgcaggacaagctgggtagtaaacaaag |
41658303 |
T |
|
| Q |
113 |
cctaatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41658304 |
cctaatgacatcgtatccattaaggcgtgttctctttctctgcctaactccttcacattcaatttcttaagaagcacttttagcaattttctaataaaag |
41658403 |
T |
|
| Q |
213 |
cttcagcatatttcatatattctagtgcttgatccctgcaaaaatgatagtcaatgaagactgatatcaatatttgttgaatttacaacttaaatagtta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658404 |
cttcagcatatttcatatattctagtgcttgatccctgcaaaaatgatagtcaatcaagactgatatcaatatttgttgaatttacaacttaaatagtta |
41658503 |
T |
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| Q |
313 |
aatttcatgatatacacaaagcaaatcatggataagtatatttcttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658504 |
aatttcatgatatacacaaagcaaatcatggataagtatatttcttacttgcatacaggaggccaatatgcatgaattttctcctctgaagtatacacaa |
41658603 |
T |
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| Q |
413 |
gatgcaggtgatccttccactccaatactgactcggcatgaggactaaa |
461 |
Q |
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| T |
41658604 |
gatgcaggtgatccttccactccaatactgactcagcatgaggactaaa |
41658652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 14628507 - 14628782
Alignment:
| Q |
13 |
aatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||| |
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| T |
14628507 |
aatatcatcttgtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaag |
14628606 |
T |
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| Q |
113 |
cctaatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaag |
212 |
Q |
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| T |
14628607 |
cctaatatcattgcacccattaacgcgtattctctttctttgtctaactccttcacattcagtttcttaagaagcacttttagcaactttctaataaaag |
14628706 |
T |
|
| Q |
213 |
cttcagcatatttcatatattctagtgcttgatccctgc-aaaaatgatagtcaatgaagactgatatcaatattt |
287 |
Q |
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| T |
14628707 |
cgtcagcatatttcatatattctagtgcttgattcctgcaaaaaaagatagtcaatcaagactgatatcaatattt |
14628782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 14644314 - 14644587
Alignment:
| Q |
15 |
tatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaagcc |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
14644314 |
tatcatcttgtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaagcc |
14644413 |
T |
|
| Q |
115 |
taatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaagct |
214 |
Q |
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| T |
14644414 |
taatatcattgcacccattaaagcgtgttctctttctttgtctaactcgttcacattcagtttcttaagaagcacttgtagcaattttctaataaaagcg |
14644513 |
T |
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| Q |
215 |
tcagcatatttcatatattctagtgcttgatccctgc-aaaaatgatagtcaatgaagactgatatcaatattt |
287 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||| |
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| T |
14644514 |
tcagcatatttcatatattctagtgcttgattcctgcaaaaaaagatagtcaatcaagactgatatcaatattt |
14644587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 461
Target Start/End: Original strand, 14629868 - 14629978
Alignment:
| Q |
351 |
tatttcttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggca |
450 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| |||||||| ||| |
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| T |
14629868 |
tattacttacttgcatacaacaggccaatatgcatgaattttctcttctgaagtatacacaagctgcaagtaatccttccactccaacactgactcagca |
14629967 |
T |
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| Q |
451 |
tgaggactaaa |
461 |
Q |
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| T |
14629968 |
tgagggctaaa |
14629978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 14644941 - 14645046
Alignment:
| Q |
356 |
cttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggcatgagg |
455 |
Q |
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| T |
14644941 |
cttacttgcatacagcaggccaatatgcatgaattttctcttctgaagtatacacaagccgcaagtaatccttccactccaatactgactcagcaagagg |
14645040 |
T |
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| Q |
456 |
actaaa |
461 |
Q |
| |
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||||| |
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| T |
14645041 |
gctaaa |
14645046 |
T |
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