View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_18 (Length: 457)
Name: NF19906_low_18
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 5154529 - 5154973
Alignment:
| Q |
1 |
ctcactgtattttcccttcatttttcgcgacttttatttctcttttgcaacaagtgttgaaataaattgttaacaagaaactattttcattaatcatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5154529 |
ctcactgtattttcccttcatttttcgcgacttttatttctcttttgcaacaagtgttgaaataaattgttaacaagaaactgttttcattaatcatgtt |
5154628 |
T |
|
| Q |
101 |
tcttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5154629 |
tcttttgaagggtttcctagacttaaaagattggagacattagatctttcagggaacgatctaaatagttgcattttgccaagtttaaatggattgactg |
5154728 |
T |
|
| Q |
201 |
ctctaacaactttgaagttgggttctaattcgatggaaaacttttatgttcaaggtacgttttgtttcaataatttatttatgaagtttatgtgatgaag |
300 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5154729 |
ctctaacaactttgaacctcggtgataatgacatggaaaacttctcttctcaaggtacgttttgtttcaataatttatttatggagtttatgtgatgaag |
5154828 |
T |
|
| Q |
301 |
tgaatgaattagaagacaattataagatcccnnnnnnntattaattattaacgataataagagactttaaataaaatgaaaaactggttatgaatcattg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5154829 |
tgaatgaattagaagacaattataagatcccaaaaaaatattaattattaacgataataagagactttaaataaaatgaaaaactggttataaatcattg |
5154928 |
T |
|
| Q |
401 |
gtaggaattgaaattaattaacaaaagcttttcattatgtatatt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154929 |
gtaggaattgaaattaattaacaaaagcttttcattatgtatatt |
5154973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 4 - 437
Target Start/End: Original strand, 5180489 - 5180924
Alignment:
| Q |
4 |
actgtattttcccttcatttttcgcgacttttatttctcttttgcaacaagtgttgaaataaattgttaacaagaaactattttcattaatcatgtttct |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5180489 |
actgtattttcccttcatttttcgtgacttttatttctcttttgcaacaagtgctgaaataaactgttaacaagaaactgttttcattaatcatgtttct |
5180588 |
T |
|
| Q |
104 |
tttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactgctc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180589 |
tttgaagggtttcctagacttaaaagattggagacattagatctttcagggaactatctaaatagtagcattttgccaagtttaaatggattgactgctc |
5180688 |
T |
|
| Q |
204 |
taacaactttgaagttgggttctaattcgatggaaaacttttatgttcaaggtacgttttgtttcaataatttatttatgaagtttatgtgatgaagtga |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5180689 |
taacaactttgaagttgggttctaatttgatgaaaaacttctctgctcaaggtacgttttgtttcaataatttatttatggagtttatgtgatgaagtga |
5180788 |
T |
|
| Q |
304 |
atgaatt-agaagacaattataagat-cccnnnnnnntattaattattaacgataataagagactttaaataaaatgaaaaactggttatgaatcattgg |
401 |
Q |
| |
|
||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180789 |
atgaattaagaagacaattataagatccccaagaaaatattaatttttaacgataataagaaactttaaataaaatgaaaaactggttatgaatcattgg |
5180888 |
T |
|
| Q |
402 |
taggaattgaaattaattaacaaaagcttttcatta |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180889 |
taggaattgaaattaattaacaaaagcttttcatta |
5180924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 445
Target Start/End: Complemental strand, 4844555 - 4844108
Alignment:
| Q |
2 |
tcactgtattttcccttcatttttcgcgacttttatttctcttttgcaacaagtgttgaaataaattgttaacaagaaactattttcattaatcatgttt |
101 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||||||| |
|
|
| T |
4844555 |
tcactgtatttttccttcatttttcgtgacttttatttctcttttgcaacaagtgttgaaataaactgttaaaaagaaattgttttcattaatcatgttt |
4844456 |
T |
|
| Q |
102 |
cttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaac---tttctaaatagtagcattttgccaagtttaaatggattgac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844455 |
cttttgaagggtttcctagacttaaaagattggagtcattagatctttcagggaacgattatctaaatagtagcattttgccaagtttaaatggattgac |
4844356 |
T |
|
| Q |
199 |
tgctctaacaactttgaagttgggttctaattcgatggaaaacttttatgttcaaggtacgttttgtttcaataatttatttatgaagtttatgtgatga |
298 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4844355 |
tgctctaacaactttaaacttgggttttaattcgatgaaaaacttctatgttcaaggtacgttttgtttcaataatttatttatggagtttatgtgatga |
4844256 |
T |
|
| Q |
299 |
agtgaatgaattagaagacaattataagatccc-nnnnnnntattaattattaacgataataagagactttaaataaaatgaaaaactggttatgaatca |
397 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4844255 |
agtgaatgaattagaagacaattataaaatcccaaagaaaatattaatttttaacgatgataagagactttaaataaaatgaaaaagtggttatgaatca |
4844156 |
T |
|
| Q |
398 |
ttggtaggaattgaaattaattaacaaaagcttttcattatgtatatt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844155 |
ttggtaggaattgaaattaattaacaaaagcttttcattatgtatatt |
4844108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 2 - 444
Target Start/End: Original strand, 5193750 - 5194192
Alignment:
| Q |
2 |
tcactgtattttcccttcatttttcgcgacttttatttctcttttgcaacaagtgttgaaataaattgttaacaagaaactattttcattaatcatgttt |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
5193750 |
tcactgtattttcccttcatttttcgtgacttttatttctcttttgcaacaaatgctgaaataaactattaacaagaaactgttttcattaatcatgttt |
5193849 |
T |
|
| Q |
102 |
cttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactgc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
5193850 |
cttttgaagggtttcctagacttaaaagattggagacattagatctttcagggaactatctaaatagtagcattttgccaagtttgaaaggattgactgc |
5193949 |
T |
|
| Q |
202 |
tctaacaactttgaagttgggttctaattcgatggaaaacttttatgttcaaggtacgttttgtttcaataatttatttatgaagtttatgtgatgaagt |
301 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||||||||||||| | || ||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5193950 |
tctgacaactttgaagttggtttccaattcgatggaaaacttctctgctcaaggtacattttgtttcaataatttatttatggagtttatgtgatgaagt |
5194049 |
T |
|
| Q |
302 |
gaatgaattagaagacaattataagatcccnnnnnnntattaattattaacgataataagagactttaaataaaatgaaaaactggttatgaatcattgg |
401 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
5194050 |
gaatgaattagaatacaattataagatccccaagaaaatataatttttaacgataataagagactttaaataaaatgaaaaagtggttatgaatcatcgg |
5194149 |
T |
|
| Q |
402 |
taggaattgaaattaattaacaaaagcttttcattatgtatat |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5194150 |
taggaattgaaattaattaacaaaagcttttcattatgtatat |
5194192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 103 - 445
Target Start/End: Original strand, 5171221 - 5171567
Alignment:
| Q |
103 |
ttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaacttt---ctaaatagtagcattttgccaagtttaaatggattgact |
199 |
Q |
| |
|
||||||||| ||||| |||||| ||| ||||||||||||||| |||||| |||| | ||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
5171221 |
ttttgaaggttttccaagacttgaaaaattggagacattagacctttcagacaactattatctaaacagtagcattttgtcaagtttgaatggattgact |
5171320 |
T |
|
| Q |
200 |
gctctaacaactttgaagttgggttctaattcgatggaaaacttttatgttcaaggtacgttttgtttcaataatttatttatgaagtttatgtgatgaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| | || ||||||||| ||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
5171321 |
gctctaacaactttgaagttgggttctaattcaatgaaaaacttctctgctcaaggtacattttgtttcaataatttatttgtggagtttatgtgatgaa |
5171420 |
T |
|
| Q |
300 |
gtgaatgaattagaagacaattataagatc-ccnnnnnnntattaattattaacgataataagagactttaaataaaatgaaaaactggttatgaatcat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5171421 |
gtgaatgaattagaagacaattataagatctcgaagaaaatattaatttttaacgataataagagactttaaataaaatgaaaaactggttatgaatcat |
5171520 |
T |
|
| Q |
399 |
tggtaggaattgaaattaattaacaaaagcttttcattatgtatatt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5171521 |
tggtaggaattgaaattaattaacaaaagcttttcattatgtatatt |
5171567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 5179321 - 5179436
Alignment:
| Q |
100 |
ttcttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgact |
199 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| || ||| ||| |||||||| || |
|
|
| T |
5179321 |
ttcttttgaaggttttccaggacttaaaag-ttggagacattagacctttcaaataactatctaaatagtagcatcttatcaaatttgaatggattaacg |
5179419 |
T |
|
| Q |
200 |
gctctaacaactttgaa |
216 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5179420 |
gctctaacaactttgaa |
5179436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 5142077 - 5142190
Alignment:
| Q |
103 |
ttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactgct |
202 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| |||| ||||||| |||| ||||||||||||||| ||| ||||||| |||||||| | ||| |
|
|
| T |
5142077 |
ttttgaaggttttccaggacttaaaaagttggagacactagacctttcaaccaactatctaaatagtagcatcttgtcaagtttgaatggattaatggct |
5142176 |
T |
|
| Q |
203 |
ctaacaactttgaa |
216 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5142177 |
ctaacaactttgaa |
5142190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 4845501 - 4845390
Alignment:
| Q |
103 |
ttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactgct |
202 |
Q |
| |
|
|||||||| ||||| ||||||| || ||||||||||||| |||||||| ||| ||||||||||||||| ||| ||||||| |||||||| || ||| |
|
|
| T |
4845501 |
ttttgaagattttccaagacttacaaagttggagacattaggcctttcaagcaacaatctaaatagtagcatcttgtcaagtttgaatggattaacggct |
4845402 |
T |
|
| Q |
203 |
ctaacaactttg |
214 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4845401 |
ctaacaactttg |
4845390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 5171053 - 5171139
Alignment:
| Q |
14 |
cccttcatttttcgcgacttttatttctcttttgcaacaagtgttgaaataaa----ttgttaacaagaaactattttcattaatca |
96 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||| |||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
5171053 |
cccttcatttttcgtgacttttatttctcttttgaaacaagtgtagaaataaactcttaattaacaagaaactgttttcattaatca |
5171139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 5205806 - 5205937
Alignment:
| Q |
103 |
ttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactgct |
202 |
Q |
| |
|
|||| |||| ||||||||||| |||| |||||||||||||| ||| ||| ||| |||||| | ||||| ||| ||||||| |||||||| |||||| |
|
|
| T |
5205806 |
ttttaaaggttttcctagactaaaaaagttggagacattagaccttacaaacaacaatctaaaaggcagcatcttgtcaagtttgaatggattaactgct |
5205905 |
T |
|
| Q |
203 |
ctaacaactttgaagttgggttctaattcgat |
234 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||| |
|
|
| T |
5205906 |
ctaaaaactttgaagctcagttataattcgat |
5205937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 5209123 - 5209225
Alignment:
| Q |
102 |
cttttgaagggtttcctagacttaaaagattggagacattagatctttcaaggaactttctaaatagtagcattttgccaagtttaaatggattgactgc |
201 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |||||| |||| | || | |||||||| || |||||||| |||||||| |||| |
|
|
| T |
5209123 |
cttttgaaggttttcctagacttaaaaagttggagacattagacctttcatggaatggtatagaaagtagcatcttaccaagtttgaatggattagctgc |
5209222 |
T |
|
| Q |
202 |
tct |
204 |
Q |
| |
|
||| |
|
|
| T |
5209223 |
tct |
5209225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 5168326 - 5168413
Alignment:
| Q |
132 |
tggagacattagatctttcaaggaactttctaaatagtagcattttgccaagttt---aaatggattgactgctctaacaactttgaa |
216 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| || ||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
5168326 |
tggagacattagacctttcaaggaaccatctaaatagtagcatcttatcaagtttgaataatggattaacggctctaacaactttgaa |
5168413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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