View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_19 (Length: 452)
Name: NF19906_low_19
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Complemental strand, 32712474 - 32712046
Alignment:
| Q |
14 |
cagttacaagatcgtggagttgctttttctactaattgcgcattgtgtgataaaggtttggaagatagtattgatctatgttttcattgtctaagtactg |
113 |
Q |
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| T |
32712474 |
cagttagaagatcgtggagttgcttgttctactaattgcgcattgtgtgataaagatttggaagatagaattgatctatgttttcattgtctaagtagtg |
32712375 |
T |
|
| Q |
114 |
ttcacagttggcagagaacggagctggtccaacactcattgaggcctgaagtgaggttatgctaaaaggttggtgacaggcacggacaactccgcctagc |
213 |
Q |
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| T |
32712374 |
ttcacagttggcagagaacggagctggtccaacactcattgaggcctaaagtgaggttatgctaaaaggttggtgacaggcacggacaactccgcctagc |
32712275 |
T |
|
| Q |
214 |
acgaatatttcatggcttcataaattatcggatagaatatgtatcctgttgttggaaagtaggaag-nnnnnnncctttgattacagaacaatagcagca |
312 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
32712274 |
acgaagatttcatggcttcataaattatcggatagaatatgtatcctgttgctggaaagtaggaagaaaaaaaacctttgattacagaacaatagcagca |
32712175 |
T |
|
| Q |
313 |
cttggaggatatccacctcccactgccataaggccctattactctcaaatgacaagatgccattatctacccctttctttctatttataagctataacta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712174 |
cttggaggatatccacctcccactgccataaggccctattactctcaaatgacaagatgccattatctacccctttctttctatttataagctataacta |
32712075 |
T |
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| Q |
413 |
actaacaacttcataactgacagacctat |
441 |
Q |
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| T |
32712074 |
actaacaacttcataactgacagacctat |
32712046 |
T |
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