View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_2 (Length: 735)
Name: NF19906_low_2
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 250 - 720
Target Start/End: Original strand, 7160935 - 7161402
Alignment:
| Q |
250 |
gtgtgtggtggtggaataagggtgttatttttgtaaactggttttctttgctaacaaatgttgttataatctctctacatcagtgtcgaggtttacaaca |
349 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
7160935 |
gtgtgtcgtggtggaataatggtgttatttttgtaaactggttttctttgctcacaaatattgtgataatctctctacatcagtgttaaggtttacaata |
7161034 |
T |
|
| Q |
350 |
tctcccaccgtttgaacgtcttccattcttgaagtt-attcatttaaatttgcttgatgaattggagtatatgtattatgaaaagctcctttcgcctgaa |
448 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | | |||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
7161035 |
tctcccaccgttggaacgtcttccattcttgaagtttattcatttaaattcgctccttaa----gagtatatatattacgaaaagctccttttgcctgag |
7161130 |
T |
|
| Q |
449 |
atattctttccgtctttagagaggctccttttatgcaagtgcaaaaagttgaggggatggtggaggatgggagatgatgtcaatgacaatgatactgatg |
548 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
7161131 |
atattctttccatctttagagaggctccttttgtgcaagtgcaaaaagttgaggggatggtggaggttgggagctgatgtcaatgacaatgatactgata |
7161230 |
T |
|
| Q |
549 |
actcgtcaaaatcacataatctctccgtcccttcgtttcctccttgtttttcgtatttatcaatcaatgattgtgaaatgttgacttgcatgcctaattt |
648 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161231 |
actcgtcaaaatcacataatctctctgtcccttcgattcctccttgtttttcgtatttatcaatcaatgattgtgaaatgttgacttgcatgcctaattt |
7161330 |
T |
|
| Q |
649 |
ttcaaaccttgacaaagcattgacacttattgactgtaatttggagacgttggaagcaacaataaacatggt |
720 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161331 |
tccaaaccttgacaaggcattgacactgattgactataatttggagacgttggaagcaacaataaacatggt |
7161402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 7160664 - 7160892
Alignment:
| Q |
16 |
atatcatgttgttctttaactaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaatttgtggcgttgcagagatttgggaagcattt |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7160664 |
atatcatgttgttctttaagtaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaacttatggcgttgcagagatttgggaagcattt |
7160763 |
T |
|
| Q |
116 |
ctaaatccataagtaattttatttgcctacaaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaattt |
215 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7160764 |
ctaaatccgtaggtaattttgtttgcctacaaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaattt |
7160863 |
T |
|
| Q |
216 |
gagatatgttgatgttaaatttttgaaag |
244 |
Q |
| |
|
||||||| |||||||||||||||| |||| |
|
|
| T |
7160864 |
gagatatcttgatgttaaatttttaaaag |
7160892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 534
Target Start/End: Complemental strand, 3917605 - 3917510
Alignment:
| Q |
439 |
ttcgcctgaaatattctttccgtctttagagaggctccttttatgcaagtgcaaaaagttgaggggatggtggaggatgggagatgatgtcaatga |
534 |
Q |
| |
|
||||||||||| |||||| || | |||| |||| ||| || |||| || ||||| ||||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
3917605 |
ttcgcctgaaacattcttcccatgtttaaagagtctctttatatggaaatgcaataagttgaggggatggtggaagatgagtgatgatgtcaatga |
3917510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 3169152 - 3169022
Alignment:
| Q |
24 |
ttgttctttaactaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaatttgtggcgttgcagagatttgggaagcatttctaaatcc |
123 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| | ||||||||||||||||||||||||| | || ||| ||||||| ||||||| ||| ||||||| |
|
|
| T |
3169152 |
ttgttctttatgtaagttgtgtgattcaattgtaaaattgaagcatttaagatatcttgacttatggtactgcagaggagtgggaagtgtttttaaatcc |
3169053 |
T |
|
| Q |
124 |
ataagtaattttatttgcctacaaacactaa |
154 |
Q |
| |
|
|||| |||| | ||||| |||||||||||| |
|
|
| T |
3169052 |
ataactaatatggtttgcttacaaacactaa |
3169022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 3172705 - 3172662
Alignment:
| Q |
43 |
tgtgaatcaatcggaaaattgaagcatttaagatatcttaattt |
86 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
3172705 |
tgtgattcaattggaaaattgaggcatttaagatatcttaattt |
3172662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University