View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_21 (Length: 440)
Name: NF19906_low_21
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 30305123 - 30304702
Alignment:
| Q |
1 |
tatgaatccatagtgaatcgttgatatgaaaaagcatgttgcaaatcaagtccttgatatcatgccgaggaacatgggtagcatggagatcccaagaaca |
100 |
Q |
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| T |
30305123 |
tatgaatccatagtgaatctttgatatgaaaaagcatgttgcaaatcaagtccttgatatcatgccgaggaacatgggtagcaaggagatcccaagaaca |
30305024 |
T |
|
| Q |
101 |
agggctgtttagaaaaaggtcgcaaacttcacattgagtttctttggtttggacaaaatgaaaacatgatcatataaatgcccaatgaatcgatccttta |
200 |
Q |
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| T |
30305023 |
agggctgtttagaaaaaggtcgcaaacttcacattgagtttctttggtttggacaaaatgaaaacatgatcatataaatgtccaatgaatcgatccttta |
30304924 |
T |
|
| Q |
201 |
caacacaaggaagaggaacaattcatatcctcaaaatgaaaccatatggtggacaacatctcaagctttgatgattaagttccaagtgacaattccttta |
300 |
Q |
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| T |
30304923 |
caacacaaggaagaggaacaattcatatcctcaaaatgaaaccatatggtggacaacatctcaagctttgatgattgagttccaagtgacaattccttta |
30304824 |
T |
|
| Q |
301 |
gtcattttttcctacaaaaagaaaaaccttgatttatctattagaaataagttgcatctagatcttctaagaaatttgcaacaaagatatattggcttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304823 |
gtcattttttcctacaaaaagaaaaaccttgatttatctattagaaataagttgcatctagatcttctaagaaatttgcaacaaagatatattggcttcg |
30304724 |
T |
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| Q |
401 |
tttgacttcttgatccccaaac |
422 |
Q |
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|||||||||||||||||||||| |
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| T |
30304723 |
tttgacttcttgatccccaaac |
30304702 |
T |
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