View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_22 (Length: 438)
Name: NF19906_low_22
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_22 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 16518 - 16928
Alignment:
| Q |
10 |
agaagaagatggaagaattgaggaagaaagctcagcattccgttcatctttgtttatgtttcacaattgtggtgtccgaggattgttaagagtttcccca |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
16518 |
agaagaagattgaagaattgaggaagaaagctcagcattccgttcatctttgtttatgtttcacaattgtgatgtttgaggattgttaagagtttcccca |
16617 |
T |
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| Q |
110 |
aaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16618 |
aaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagt |
16717 |
T |
|
| Q |
210 |
gcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctac------- |
302 |
Q |
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| T |
16718 |
gcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgata |
16817 |
T |
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| Q |
303 |
--attgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16818 |
atattgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattatta |
16917 |
T |
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| Q |
401 |
actcatccatc |
411 |
Q |
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| T |
16918 |
actcatccatc |
16928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 1401840 - 1401430
Alignment:
| Q |
10 |
agaagaagatggaagaattgaggaagaaagctcagcattccgttcatctttgtttatgtttcacaattgtggtgtccgaggattgttaagagtttcccca |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
1401840 |
agaagaagattgaagaattgaggaagaaagctcagcattccgttcatctttgtttatgtttcacaattgtgatgtttgaggattgttaagagtttcccca |
1401741 |
T |
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| Q |
110 |
aaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagt |
209 |
Q |
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| T |
1401740 |
aaataccaccaagagttataaccaatttgcattcaataattttctagtttttaccatgctttacatgcttaatgttgtgtaatttttgctacataatagt |
1401641 |
T |
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| Q |
210 |
gcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgata |
309 |
Q |
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| T |
1401640 |
gcaattatagctaaagagggtctcatcactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgata |
1401541 |
T |
|
| Q |
310 |
a---------tatttggttaattttgtattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattatta |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1401540 |
atattgataatatttggttaattttgtattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattatta |
1401441 |
T |
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| Q |
401 |
actcatccatc |
411 |
Q |
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| T |
1401440 |
actcatccatc |
1401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
| Q |
308 |
taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat |
395 |
Q |
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|||||||||||||| |||| |||| |||| |||| ||||| || ||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
1376218 |
taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat |
1376128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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