View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_24 (Length: 431)
Name: NF19906_low_24
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_24 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 28215340 - 28214937
Alignment:
| Q |
18 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215340 |
aatcaaacattaaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
28215241 |
T |
|
| Q |
118 |
cagcgagagattccgnnnnnnnggtttgttcttaacatatttcttctcttaaaagctctcaatcattctcatgcattttggaatttctagcctgcaaatt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215240 |
cagcgagagattccgtttttttggtttgttcttaacatatttcttctcttaaaagctctcaatcattctcatgcattttggaatttctagcctgcaaatt |
28215141 |
T |
|
| Q |
218 |
aagggcatgtaaacattttcagttttcattttctaaaacttcttttcattttaaattgttaacatggcgatggaaaacttgtatagtgaataattttgat |
317 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215140 |
aagggcatgtaaacattttcagttttctttttctaaaacttcttttcattttacattgttaacatggcgatggaaaacttgtatagtgaataattttgat |
28215041 |
T |
|
| Q |
318 |
agagagaaaatacaaggatagttagggagaaaggatttttagaaacaatgataacattgtctgatccctgcctcgttttgtccttaattatttttgcacc |
417 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28215040 |
agagagaaaatacaaggatagttagggagaatggatttttagaaacaatgataacattgtctgatccctgcctcattttgtccttaattatttttgcacc |
28214941 |
T |
|
| Q |
418 |
tatg |
421 |
Q |
| |
|
|||| |
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|
| T |
28214940 |
tatg |
28214937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 28220916 - 28221247
Alignment:
| Q |
18 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28220916 |
aatcaaacattgaaaggtaatgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
28221015 |
T |
|
| Q |
118 |
cagcgagagattccgnnnnnnnggtttgttcttaacatatttcttctcttaaaagctctcaatcattctcatgcattttggaatttctagcctgcaaatt |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28221016 |
cagcgagagattccgtttttttggtttgttcttaacatatttcttctcttaaaagttctcaatcattctcatgcattttgaaatttctagcctgcaaatt |
28221115 |
T |
|
| Q |
218 |
aagggcatgtaaacattttcagttttcattttctaaaacttcttttcattttaaattgttaacatg----gcgatggaaaacttgtatagtgaataattt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
28221116 |
aagggcatgtaaacattttcagttttcattttctaaaatttcttttcgttttaaattgttaacattaattgcgatggaaaacttgtatggtgaataattt |
28221215 |
T |
|
| Q |
314 |
tgatagagagaaaatacaaggatagttaggga |
345 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
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|
| T |
28221216 |
tgatagatagaaaatacaaggatagttaggga |
28221247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 32309705 - 32309819
Alignment:
| Q |
18 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
32309705 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgtgtcttgtgctgatatacttgctcttg |
32309804 |
T |
|
| Q |
118 |
cagcgagagattccg |
132 |
Q |
| |
|
| || |||||||||| |
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|
| T |
32309805 |
ccgcaagagattccg |
32309819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 32565129 - 32565015
Alignment:
| Q |
18 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||| |
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|
| T |
32565129 |
aatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttg |
32565030 |
T |
|
| Q |
118 |
cagcgagagattccg |
132 |
Q |
| |
|
| || |||||||||| |
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|
| T |
32565029 |
ccgcaagagattccg |
32565015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 32814752 - 32814638
Alignment:
| Q |
18 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32814752 |
aatcaaacattgaaaggttttgacaaagttgacttgatcaaggaagaggtggagcaagcatgtcccggcgttgtttcttgtgctgacatacttgctcttg |
32814653 |
T |
|
| Q |
118 |
cagcgagagattccg |
132 |
Q |
| |
|
| | |||||||||| |
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|
| T |
32814652 |
ccgtaagagattccg |
32814638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 32305572 - 32305671
Alignment:
| Q |
18 |
aatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
32305572 |
aatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggatcaagcatgtcccggcgttgtgtcttgtactgacatacttgctcttg |
32305671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 12979186 - 12979145
Alignment:
| Q |
229 |
aacattttcagttttcattttctaaaacttcttttcatttta |
270 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||| |
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|
| T |
12979186 |
aacattttcagttttcattttctaaaatttatgttcatttta |
12979145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 23918119 - 23918034
Alignment:
| Q |
233 |
ttttcagttttcattttctaaaacttcttttcattttaaattgttaacatggcgatggaaaacttgtatagtgaataattttgata |
318 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||||| ||| |||| |||| |||||| ||||||||| |||| ||||| |
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|
| T |
23918119 |
ttttcagtcttcattttctaaaacctgttttcattttaaattaataaaatggtgatgaaaaactcatatagtgaacaattctgata |
23918034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 32863625 - 32863562
Alignment:
| Q |
301 |
tagtgaataattttgatagagagaaaatacaaggatagttagggagaaaggatttttagaaaca |
364 |
Q |
| |
|
||||||||| | |||||||||||| ||| |||||||||||||||||| | ||||| ||||||| |
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|
| T |
32863625 |
tagtgaatatatgtgatagagagaagatagaaggatagttagggagaatgcattttgagaaaca |
32863562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 368
Target Start/End: Complemental strand, 26128781 - 26128645
Alignment:
| Q |
232 |
attttcagttttcattttctaaaacttcttttcattttaaattgttaacatggcgatggaaaacttgtatagtgaataattttgatagagagaaaataca |
331 |
Q |
| |
|
|||||||||||||||||| ||||| | | |||||||||||||||||||| | |||| || |||||| ||| ||| |||| ||||||||| || | | |
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|
| T |
26128781 |
attttcagttttcattttttaaaatatatgttcattttaaattgttaacaagtagatgaaagacttgtgtagggaacaattgtgatagagaaaaggtgga |
26128682 |
T |
|
| Q |
332 |
aggatagttagggagaaaggatttttagaaacaatga |
368 |
Q |
| |
|
|||| || ||| |||| | ||||||||||||||||| |
|
|
| T |
26128681 |
aggaaagctagaaagaatgcatttttagaaacaatga |
26128645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 45301935 - 45301882
Alignment:
| Q |
228 |
aaacattttcagttttcattttctaaaacttcttttcattttaaattgttaaca |
281 |
Q |
| |
|
|||||||||||| |||||||||| |||| || | |||||||||||||| ||||| |
|
|
| T |
45301935 |
aaacattttcagctttcattttccaaaatttatgttcattttaaattgctaaca |
45301882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 102379 - 102427
Alignment:
| Q |
231 |
cattttcagttttcattttctaaaacttcttttcattttaaattgttaa |
279 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| ||||| |||||||| |
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|
| T |
102379 |
cattttcagttttcattttctaaaatttgtgttcgttttagattgttaa |
102427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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