View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_25 (Length: 427)
Name: NF19906_low_25
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 15172632 - 15172356
Alignment:
| Q |
1 |
aaggaacaaacttcgaataacatgataatggtaccgcgtgatcacaaatcgaataatagattctctgcctcagattccaacagtagacttcctaatgatt |
100 |
Q |
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| T |
15172632 |
aaggaacaaacttcgaataacataataatcgtaccgcgtgatctcaaatcgaataatagattctctgcctcagattccaacagtagtcttcctaatgatt |
15172533 |
T |
|
| Q |
101 |
cgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatatgtgcaccttgcagtcactttcacaaagt |
200 |
Q |
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| T |
15172532 |
cgaatatatttgatatagatttcgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatatgtgcaccttgcagtcactttcacaaagt |
15172433 |
T |
|
| Q |
201 |
tgttgctcctcaatagtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtcttgttga |
277 |
Q |
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| T |
15172432 |
tgttgctcctcaatagtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtcttgttga |
15172356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 15172303 - 15172199
Alignment:
| Q |
310 |
cacatttgaattcaatccaacagtaaatttcacaaaccgt----tggtgttcaatatagaagaaaactgagatacacattagttttagatacctgtggga |
405 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15172303 |
cacatttgaattcaatccaacggtaaatttcacaaaccgtacgttggtgttcaatatagaagaaaactgagatacacattagttttagatacctgtggga |
15172204 |
T |
|
| Q |
406 |
gaaac |
410 |
Q |
| |
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||||| |
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| T |
15172203 |
gaaac |
15172199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 15168082 - 15168029
Alignment:
| Q |
355 |
ttcaatatagaagaaaactgagatacacattagttttagatacctgtgggagaa |
408 |
Q |
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| T |
15168082 |
ttcaatatagaagaaaactgagatacacattagttttagatacctgtggaagaa |
15168029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 400
Target Start/End: Complemental strand, 15164461 - 15164368
Alignment:
| Q |
311 |
acatttgaattcaatccaacagtaaatttcacaaaccgttggtgttcaat----atagaagaaaactgagatacacattagttttagatacctg |
400 |
Q |
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||||||||||| | || ||||||||||||||||||| ||| ||||||| | |||||||||||||| |||||||||||||||||| |||||| |
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| T |
15164461 |
acatttgaattaagtctaacagtaaatttcacaaacagtttgtgttcattcaaaatagaagaaaactgtgatacacattagttttagttacctg |
15164368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 31458318 - 31458197
Alignment:
| Q |
73 |
gattccaacagtagacttcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatat |
172 |
Q |
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||||||| |||||| ||||| ||||||| ||||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||| ||| |||| | |
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| T |
31458318 |
gattccagcagtagccttcccaatgattggaatatatttgatatagattttgcagatttaagctttgttatgtctatatttttcaacacgtccaaaatct |
31458219 |
T |
|
| Q |
173 |
gtgcaccttgcagtcactttcaca |
196 |
Q |
| |
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||| ||||| |||||||||||| |
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| T |
31458218 |
gtg--tcttgcggtcactttcaca |
31458197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 31448019 - 31447909
Alignment:
| Q |
60 |
attctctgcctcagattccaacagtagacttcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaac |
159 |
Q |
| |
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|||||| || || ||||||| ||||| |||||||| ||| ||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| |
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| T |
31448019 |
attctccgcatctgattccagcagtaaccttcctaacaattggaatatatttgatataggttttgccgatgtaagcttttccatgtctatatttttcaac |
31447920 |
T |
|
| Q |
160 |
acatccgaaat |
170 |
Q |
| |
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|| ||| |||| |
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| T |
31447919 |
acgtccaaaat |
31447909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 29709243 - 29709141
Alignment:
| Q |
311 |
acatttgaattcaatccaacagtaaatttcacaaaccgttggtgttca-----atatagaagaaaactgagatacacattagttttagatacctgtggga |
405 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||| || |||||||| ||||||||||||||| |||||| |||||||||||||||||||||| | |
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| T |
29709243 |
acatttgaattgagtacaacagtaaatttcacaaacagtcggtgttcattataatatagaagaaaactaagatacgcattagttttagatacctgtggaa |
29709144 |
T |
|
| Q |
406 |
gaa |
408 |
Q |
| |
|
||| |
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|
| T |
29709143 |
gaa |
29709141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 1522852 - 1522722
Alignment:
| Q |
64 |
tctgcctcagattccaacagtagacttcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaacacat |
163 |
Q |
| |
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||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||| |||| |||| |||||| | |||||||| | |||| |
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| T |
1522852 |
tctgcctcagatttcaactgtagccttcctaatgattttaatatatttgatatagattttgaa---gcaaactctgtaatgtttgtatttttcgaaacat |
1522756 |
T |
|
| Q |
164 |
ccgaaatatgtgcaccttgcagtcactttcacaaag |
199 |
Q |
| |
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||||||| ||| |||||| |||||||||||||| |
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| T |
1522755 |
ccgaaatctgt--tccttgcgatcactttcacaaag |
1522722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 1522159 - 1522098
Alignment:
| Q |
210 |
tcaatagtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtct |
271 |
Q |
| |
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||||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
1522159 |
tcaatggtatcctctctagaaatccacgatcgtttcctctcaattgttagttcctcttgtct |
1522098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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