View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_27 (Length: 423)
Name: NF19906_low_27
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 3748851 - 3748444
Alignment:
| Q |
1 |
gtggaggggaagggagttgaattcttcctccaacatttcagttcgattgacgattttcgacttgaaaccttctgaacctatccaccc-tacaataaacta |
99 |
Q |
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| T |
3748851 |
gtggagaggaagggagttgaattcttcctccaacatttaagtttgattgacgattttcgacttgaa-ccttctgaacttgtccacccctacaatggatta |
3748753 |
T |
|
| Q |
100 |
cttgaaaaataatttctattaacaaaggaaaaatccatgcacctttcccgtacatagataaccacatataaagtaaataattggaccctcatcttccatt |
199 |
Q |
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| T |
3748752 |
cttgaaaaataatttctattaacaaaggaaaaatccatgcacctttcccgtacatagataaccacatataaagtaaataattggaccctcatcttccatt |
3748653 |
T |
|
| Q |
200 |
gcaggataaagaaagtaaagtaactttacaataacttcatgaactaattaaatattctacttattggtttaagctgtattgttttgattatgttgagaac |
299 |
Q |
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| T |
3748652 |
gcaggataaagaaagtaaagtaactttacaataacttcatgaactaattaaatatactacttattggtttaagctctattgttttgattatgttgagaac |
3748553 |
T |
|
| Q |
300 |
aatataattgattttttaaatgaaggttatttataaaagtgatattgttttaacgtggtacatggtcatttcaactatatatgttgatacctccaatgaa |
399 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3748552 |
aatataattgattttttaaatgaa-gatatttataaaagtgatattgttttaatgtggtacatggtcatttcaactatatatgttgatacctccaatgaa |
3748454 |
T |
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| Q |
400 |
ccaccaatat |
409 |
Q |
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|||||||||| |
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| T |
3748453 |
ccaccaatat |
3748444 |
T |
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